RNA id: XM_039796501.1


Basic Information

Item Value
RNA id XM_039796501.1
length 1631
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120556777
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15713249 ~ 15715495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGGATGCACATAAAATGTAACACCAGCAGGAAGCCAGACATTCAGCGCACCTGATCACTGAAGAGAATGACATAGATACACATCAGCAATTAGTAAGACTGGCAGAAATCTTCAGCTTTAAGTTGACAGAATGCTGATGAACTACACCAACCAAACAGAGGATGACCTCTTCTCCTGCTACAGTCCTTCAGTCGTAGGCTACCGGTACTTTGCTGTGCTGTGGGGATGTGCTGTGACCATCACTGGTACGGTGGGGAACCTGATGACCATTCTGGCCTTCGCCTTAGACCCACGTCTGAGGACTCGCTTCAATGTGCTCATCATCAACCTGGCTGTAGCTGATCTCCTGTACTGCACCGTACTGCAGCCCATATCAATTGACTCCTATCTACACCTCAGGTGGcgcagtggtcagctctggtgcAGCATCTTTggcctgctcctcttcctctccaacTCTGTCTCCATTATCACCCTCTGCCTGGTAGCGGTGAGCCGATATCTACTGGTCACAAAGAGGGCTGTGTTTGACCGTGTCTTCTCTGACCGTGGTCTTATCCTACTCCTGATCTCAGCGTGGGCACTGGGCTTTGCCAGCTTTGGCCCTCTCTGGCCTGTTTACGTGTTTGTGCCACAGGTGTGCACATGCAGCTTCCATCGTACCAGGGGTCGTCCTTACAGCACCATCTTGctctttttctacttttttgtgGGTCTGGGCTGTGTTGGTGTATTCTACTTCCTCATTTACAGACGTGTCAGGATTGCAGCTCAAGCTCTGCTCCGCTACAGGTTCAGCCGCCGGTCCTCCAGGAAGAAACCAGCATCTTCAGCACAAGGGACTGATGACAGTGGTGTAGAGAGTGGCACGGCAAAGACATGCAGCTGTGAGGTGAGCAGCCAGATGGATTTAACCCAAAGTATGGATGAGATCACCTGTGAAAAATCCTCCAAATCTGCCCAGACCTCTGCCAAGGCCCTAAATTCATCAGCAACCAATTCTCCCCCTGAAACATTACCTTCAACCACACCTGCTCCGACCACTGCAGCACCCTCTTCCCAATCAGCAACTTCAGGAGATGATGACGAATTTAAGCGTGTGACACGCATGTGTTTCACAGTTTTTCTCTGTTTCGTGTTCTGCTTTGTCCCCTTCATGTTGCTCAACATAGCAGACAAACAAAACCGTGCCCCACAGGTACTGCACAtgttctctgcaaatctcacgtGGCTCAACAGCTGTATCAACCCCATGCTCTATGCTGTCATGAACAGACAGTTTCGACAGGCCTACCATGTGCTGCTCACCAGGGCTGCTGCACCATTCACCTGCCTCTGGACCTGGTGGTCATCACTGAGATCCTAAACTCTTCATCCTAAAGCTTAAACTTGCCTGATGTTCATCCTGATGTAAACCcactataataatattattattgtgaaatacACAGACATAGGCATCTACATTCAGCCACTTTTAACTTTTAAGTTGCTTTTCTGTTACATTTGTGTTTCATTAACATTTCAGACTGCATTTGCAGTTTGCCTTTTCAGTATATTATGTATGTAcaagattacattatgtgtttaTGTCATGTATGGAATAAAGTCTATTTTGTAATATATAA

Function

GO: NA

KEGG:

id description
K08421 GPR84; G protein-coupled receptor 84

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52133 lncRNA upstream 68850 15644061 ~ 15644399 (+) True G38832
TU52129 lncRNA upstream 86409 15626311 ~ 15626840 (+) True G38829
TU52079 lncRNA upstream 169877 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 249797 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 315742 15396729 ~ 15397507 (+) True G38738
TU52172 lncRNA downstream 3501 15718996 ~ 15722184 (+) True G38858
TU52174 lncRNA downstream 12484 15727979 ~ 15729400 (+) True G38860
TU52211 lncRNA downstream 45297 15760792 ~ 15762315 (+) True G38885
TU52290 lncRNA downstream 199044 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 203890 15919385 ~ 15921616 (+) True LOC120557201
XM_039796376.1 mRNA upstream 2359 15710216 ~ 15710890 (+) True LOC120556700
XM_039798516.1 mRNA upstream 4109 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA upstream 4109 15684082 ~ 15709140 (+) False LOC120557865
XM_039796730.1 mRNA upstream 51253 15657531 ~ 15661996 (+) True endou
XM_039798065.1 mRNA upstream 69694 15631352 ~ 15643555 (+) True smarcc2
XM_039798870.1 mRNA downstream 21050 15736545 ~ 15741669 (+) True tac3b
XM_039798865.1 mRNA downstream 56694 15772189 ~ 15789905 (+) False b4galnt1b
XM_039798862.1 mRNA downstream 60968 15776463 ~ 15789905 (+) True b4galnt1b
XM_039798864.1 mRNA downstream 62522 15778017 ~ 15789905 (+) False b4galnt1b
XM_039798863.1 mRNA downstream 62535 15778030 ~ 15789905 (+) False b4galnt1b
TU52135 other upstream 65398 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 838790 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 896813 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1375489 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1479724 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 249919 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 334410 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 717743 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 802041 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1396618 17112113 ~ 17119890 (+) True G39351

Expression Profile