RNA id: XM_039796541.1


Basic Information

Item Value
RNA id XM_039796541.1
length 727
RNA type mRNA
GC content 0.54
exon number 4
gene id c4h1orf158
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 27964559 ~ 27966394 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTTAGGTACGTTTGACACCAGGTAAAGCATGCACCAAACAGGGACTGTGCAGGATAAATGGGCCCAAACCGGCTGGAGGATAGAGCAGAAGTATGCCAACAAAGTGCTGGTAGGCAACTGGGCGGAAGAAAGACTTCAGTTCACTCGGGAGCCACAGACAGCCAACAGCACCAACCGTGTAGACTACCGGCCCCACTGGGACTTCAAGCCAGACGTCTTTGAGAGACGATCTGCCCTGCTGAGAGCTGAGGGGCTTCCATCCAAGCTGCTATTTGCCCACTGTGGCCCGCCATCCTCTAATTACTTGGTCACGCACTCTGAAGAGAGATACCAGTGTAAACATACCAATGCTTTGCCCACTCTGCTGCCCGGGCATCCAGACAGCTTGACATGGCAGCTTGAGAGGTCTGACCGGCCAGTTTCTGCCCTTCCAACCAACTCTGGCCCGCTGCGGTCCACAAAGCACCGTTTGGAAAAGCAGCAGTCACACCTCCCGTCACTGACTGTGTATAGGTCAGCATACCAGAAGCACCCACTTAGTGCCTTCTGCCAGAGCCGCTTTGCCAGGGCTTCACGCATGCTGTCCAGCCACCTCCATGcagccaatcacaacaataaGGACCTGGATCTGAGGCAGCACTCGCTACTACAAATCCCAGATCATTGTTTGAGTCAACCTCCACAATCACAACTGGCAGAGAGACAACAATGTGGTTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56713 lncRNA upstream 141306 27722002 ~ 27823253 (+) False ephb2b
TU56721 lncRNA upstream 141306 27749079 ~ 27823253 (+) False ephb2b
TU56703 lncRNA upstream 311111 27653121 ~ 27653448 (+) True G42147
TU56605 lncRNA upstream 502800 27460521 ~ 27461759 (+) True G42085
TU56594 lncRNA upstream 518278 27442408 ~ 27446281 (+) True G42075
TU56793 lncRNA downstream 248354 28214748 ~ 28215179 (+) True G42211
TU56813 lncRNA downstream 594400 28560794 ~ 28561264 (+) True G42230
TU56849 lncRNA downstream 643823 28610217 ~ 28611502 (+) True G42249
XR_005638969.1 lncRNA downstream 864214 28830608 ~ 28836904 (+) True LOC120557449
TU56979 lncRNA downstream 914450 28880844 ~ 28881314 (+) True G42345
XM_039797398.1 mRNA upstream 465 27960725 ~ 27964094 (+) True aadacl4
XM_039798389.1 mRNA upstream 63963 27881093 ~ 27900596 (+) True lrrc38b
XM_039796540.1 mRNA upstream 87948 27875542 ~ 27876611 (+) True LOC120556812
XM_039797734.1 mRNA upstream 141299 27688195 ~ 27823260 (+) False ephb2b
XM_039798897.1 mRNA downstream 400516 28366910 ~ 28369124 (+) True LOC120558056
XM_039798503.1 mRNA downstream 646146 28612540 ~ 28640354 (+) False rnf207a
XM_039798506.1 mRNA downstream 646152 28612546 ~ 28640689 (+) False rnf207a
XM_039798502.1 mRNA downstream 646414 28612808 ~ 28640689 (+) True rnf207a
XM_039798507.1 mRNA downstream 653847 28620241 ~ 28640689 (+) False rnf207a
XR_005639013.1 other upstream 1265988 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 1415760 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 1415760 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 1691244 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 4203608 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 1274019 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 4493738 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 4504401 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 5071540 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 5221344 33187738 ~ 33212318 (+) True G43277

Expression Profile