RNA id: XM_039796552.1


Basic Information

Item Value
RNA id XM_039796552.1
length 3554
RNA type mRNA
GC content 0.51
exon number 22
gene id usp4
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16566701 ~ 16578215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACGTTTCCCATGAGCAGGCTCAGAAGCTCGCCCAAGTGCGCGGCCTCATCCATTCGCGCGTTCACGATACCGGCAGACTCTCTGCATGATGGCCGAGGGAGGCGGACCCGAGCCGGGTGGCGCGGCAGACTCCGACTCTGAGCCGGTAGCCGCAGAAATGCCAACCCCTTCAACCGAAAATCAAAAACAGACTATTGGGTCACTATTGAAAACAACTCTAAGGAAGGGCGACGAATGGTATCTAATAGACAGCCGGTGGTTCAAACAATGGAAGAAGTATGTTGGATTTGACAGCTGGGACATGTACAATGTTGGAGAACGTAGCCTCTATCCAGGACCAATTGATAACTCTGGGCTGTTCTCAGACCAGGAGACTCAAGCCCTGAAAGAGCACCTTATAGATGAGCTGGACTATGTCCTTGTACCCACTGAGGCATGGAATAAACTTGTGAGCTGGTACGGCTGCCTTGAGGGCCAGAGATCCATTGTCAGGAAGGTTGTTGAGCATGGCATGTTTGTCAAGCACTGTAAGGTGGAGGTCTATTTGCTGGAGCTGAACTTGTGTGAGAACGACAACATGGACAATGTTGTCACGCGTCATTTCAGTAAAGCTGATACTATAGATACTATAGAGAAGGAGATGAGGACGCTGTTCAATATCCCATCAGAGAAGGAGACACGGCTCTGGAACAAATACATGAGCAACACCTACGAACAGCTGAACAAGCCAGACAGCACCGTACAGGATGCTGGTCTCTTCCAGGGGCAGGTGCTTGTTATTGAACGGAAGAATGAGGATGGCACGTGGCCCAGACAAGCTTCCCATCCCAAATCCAGTACAACCCCATCCAGGAATTTCACTACCTCCCCAAAACTCTCCTCCAACTCAACAGCCAGTATCTCTTCAACAGTAACTAACGGAGACAGCAGCTGTAGCCCTGGCTACACACTTAACAACAGCACCTCCTCTGGCAACAGATTGGGGGGCTACAATTCATACAGCTCCTCCTACAACTACAGAGAGTCGCAGTCACAGCCTGGCCTGTGTGGTCTCAGTAATTTGGGCAACACATGCTTCATGAACTCTGCCCTCcagTGCCTGAGCAATGCATCTCCACTCACAGAGTACTTCCTCAATGACCAGTATGAGGCAGAGATTAACCGAGAGAATCCCCTGGGAATGAGGGGCGAGATTGCAGAGGCCTATGCAGATCTAGTAAAGCAGATGTGGCTGAGCCGCAGCAGCTATGTGGCCCCACGTACTTTCAAGACCCAGGTTGGACGTTTTGCCCCCCAGTTTTCAGGCTACCAGCAGCAGGACTCGCAGGAGCTGTTGGCCTTCCTGCTCGACGGGCTCCATGAAGATCTGAACCGCGTCAAAAAGAAGCCTTATCTGGCCCTGAGGGATGCTGAGGGCCGTCCAGACGAGATTGTTGCAAAGGAAGCTTGGACGAACCACCGCTTGCGCAATGACTCGATTATCGTTGATATTTTCCACGGCCTCTTCAAATCCACTTTGGTGTGCCCAGAGTGCTCCAAGGTGTCTGTAACCTTTGACCCATTCTGCTACCTCACACTGCCTCTGCCCATGAAGAAGGACCGTACTATGGAGGTTTTCCTGGTGCGATCAGACCCTGAGTCGAGACCCACACAGTATCGAGTCGTGGTCCCAAAACTGGGTACGGTGACAGACCTGTGCAGCGCCTTGTCCAAACTCTGTGGATTCCCTCCAGAAAATATGGTGGTGGCTGACGTTTACAATCATAGGTTCCATAAAATCTACAGACGGGATGATGGCCTCAACCAAATAATGGAAAAAGATGACATCTTTGTATATGAGGTACAGGAGGAGGACAGTGAGCGGATGAACCTGCCTGTGTATTTCAGGGAGCGCCACTCCAAGCATGTCGGAAGTTCCACGAGCACCATGCTGTTTGGCCAGCCTTTACTCCTCAGCGTGCCCAGACACAACCTCGTAGCAGACATCCTTTACGACAAGATCCTAGAGAAAATTGGGCGCTATGTAAAACAATCCCAGGgccctcataatgaaagcagagcctcagcctcagcctcagcctcagcctcagcctcatcctcatcctcatcctcatcctctgCCTCAGCCTCAGCGACCGTCGCCAGCTGCAGCCAAGCTCCTGAATGTTCCACAGCATCTAGTCTCAGTGCCAGCCTGGGTGGCTGTGGCAGCCCCCTGTCAGACGGGGCCTCGTGCAGTGCCAGCTTCAGTAACGGCAGCAACCACTCAGGGACATGCAACAAAACTAATGGGCTATATGATGGTGAGGAGGAAGCCATGGACCACCAGGGGAGTCCAGAGCCAGAGAATGGCCAGtctgaagaggaggaagaggagacctCTGACTTGGAAAATGGGTCTAAGGGAGCCATGCCCAAGCAGTCTTCGCCAGCCAAACTCTTCACTTTCAGCATAGTCAACTCTTACGGAACAGCTAACATCAGCCCGCTGCCCTGTGATGGAAATGTCCTCAAACTTAATCcgCATTCAACGGTGGCGATTGACTGGGACACAGAGTCAAAGAAACTGTGTTATGATGAACAGGAAGCAGAGGCCTATGAGAAGCATGAGAGCATGCTCCAGCCCCAAAAGAAGAAAGCCACTGTGGCTCTGAGGGAATGCATTGAGCTCTTTACCACCATGGAGACACTTGGAGAACACGATCCATGGTATTGTCCAACATGTAAGAAACACCAACAGGCCACAAAAAAGTTTGACTTGTGGTCGCTGCCTCGAGTTCTGGTAGTTCATCTAAAGCGATTTTCCTACAACCGGTGTTGGAGGGACAAGCTGGACACGGTGGTGGACTTTCCCATCAGGGATCTGAACATGTCCGAGTTTGTGTGTGACCCGAAGGCCGGCCCCTACATATACGACCTTGTTGCCGTGTCAAACCACTACGGAGGAATGGGAGGGGGTCACTACACCGGTTATGGCAAGAATAAAGTGGACGGAAAGTGGTATTACTTTGATGACAGCAGTGTCTCCTCTGCCTCAGAGGACCAGATTGTGACTAAAGCAGCCTATGTGCTGTTCTATCAGCGCAGAGACGAGGAAGCCCCCTCCAAACCTCAGCCTTCGGCCTCGCTGGGAGGAGCCCCAGAAGCAGTCGATGACCACATGGACACAAACTGAGGAGCCCTGACGCGAAGGGAAACGCACTGAAACACATACAGCAAATAGAGACACTCGGACGCACACACAAAGCTCCTTTAGTGACAGAGGACTCCACAGACTTAACATTATTAACCCTACCTTCCCCGTATTTTATTTGGTTTCTGTCTCGTATGTTGTCAACTAGAGCCAACAGCCTTGTCAGAAGAGTGACCTGAGAGACTTCCTCCCTGCAGCGGGTGGCCTACTGATTTCTGATCCTAATTTACTAGTCTGGAACTAAAGAGGAGTCTAAATGGATATAGATCCTCTCACTGGATGAACAGAATGTTAGAAGTGCCCTCAAATGCGTAGATAAACAAATGTTtcagaaatatattaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52544 lncRNA upstream 10496 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 44364 16517536 ~ 16522337 (+) False G39116
TU52514 lncRNA upstream 56516 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 314976 16235014 ~ 16251725 (+) True G39076
TU52421 lncRNA upstream 370917 16195379 ~ 16195784 (+) True G39052
TU52557 lncRNA downstream 870 16579085 ~ 16579722 (+) True G39143
TU52617 lncRNA downstream 204196 16782411 ~ 16782618 (+) True G39195
TU52618 lncRNA downstream 206533 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 207616 16785831 ~ 16786051 (+) True G39197
TU52633 lncRNA downstream 240531 16818746 ~ 16823256 (+) True G39210
XM_039796553.1 mRNA upstream 306 16562865 ~ 16566395 (+) True emc3
XM_039798001.1 mRNA upstream 399563 16161960 ~ 16167138 (+) True arpc4
XM_039798595.1 mRNA upstream 409192 16149125 ~ 16157509 (+) False LOC120557902
XM_039796384.1 mRNA upstream 506371 16049678 ~ 16060330 (+) True eefsec
XM_039798371.1 mRNA upstream 525488 16039813 ~ 16041213 (+) True mustn1a
XM_039796555.1 mRNA downstream 6197 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA downstream 6387 16584602 ~ 16605415 (+) True fancd2
XM_039796558.1 mRNA downstream 6387 16584602 ~ 16605415 (+) False fancd2
XM_039796559.1 mRNA downstream 28236 16606451 ~ 16681516 (+) True tex264a
XM_039796275.1 mRNA downstream 105593 16683808 ~ 16716227 (+) True grm2a
TU52524 other upstream 23121 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 131472 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 516271 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 600594 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 918850 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 533898 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 615006 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 615006 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 615006 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 615006 17193221 ~ 17198217 (+) False srsf3b

Expression Profile