RNA id: XM_039796556.1


Basic Information

Item Value
RNA id XM_039796556.1
length 5058
RNA type mRNA
GC content 0.49
exon number 44
gene id fancd2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16584412 ~ 16605415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tAGAGACCGTCAAAAAACAAGTTGTCATCTTGGTAGTGTTGAACGACGAAACCAATTTTAATAGCAGAACAGAGACTTTAGTCAACAGACTAACTTCTAAAGGAGCTATATATCAAATGTATAATTGACGTATTGGTCATTTAATTCTAGCTGTTACCGCATGTTACCTAAACTCCAAGAAGATGACCACTGACACAGATCCCTAACTGTGGTTGATGACGGCGCGCACAGCACATTGGCGCGGGAGTTTGTTTTGTAacttctgtgtctgtctgtcggttcTGGGTTAGTAGTATCGTCGTCTGTGGGTTCGTCTGCCAATAAACATGATGCGTAAAAAGCGACGCCCCTGTCTGGATAAAGGGGAGGAAGCTGCTACGACTACTAAGGCAAAGAGGAGTCGCAGCAATGGTCGCCAAACAAAGGAACCTGCCCCAGAAGAGACGAATGAAAGTGTATTTAGCGTCTTTCTTCGTGAGGCAGGTGTCACCTTGAAACCAGGTGGCACATCCAATGAGATTGCTGTGGACCAAGTCGTTTTCCAAAAAAGGATACAGAAACAACTACAGAAGAGTCCCAGGTACCCTGGGATTGTACAGGAATTCACCACTGGCTTGGAGTCTCATATTGAGGACCCTGAGCTGTTTAGGAACTGCCTTCTTCCATGTGTCCCACGATTGTCTGATGGAGACTCCAGTTGTGGCAGCTCATTCCAGGAAAGTCTGCTACGCATGCTGTTGGGGATTGAGATGCTGCAGACCTTTATTATTAACACCTTGCTCGAGAAACTCCCTGAATTTATGTTTGATGGTACTGGAGATGGAGGGCTCAGTATTCCTCACACAATTATTAACCAGCTTAAATGGCTAGACAGAGTCGTGGACAGCAAGGAGTTGGCAGTGAAGCTCATGGAGCTGGTGTCCGTAGCAGCAGTGGAGGTTCAGCGTGACATCATCACCAGTCTGCCAGAGATACTGGAAGACTCCCAGCACAATGACATAGCCAGAGAGCTCAACTCTTTACTCCAGGAGAACACTCAGTTAACTGTCCCCATCCTGGATGCCCTCTCTAGTCTGAACCTCAGTTACTCACTACTTACTGagGTCCGTGGAGCCGTTATGACCACTTTGGCTGCTGTGCGACTTGAGGACCTACCTGTGGTGGTCAAGTTCATCCTGCACTCTGTCTCAGCCTCTGATGCATATGAGGTGGTGTGTAATCTTCGTAAAAAGCTGGAGTTGGAGCAGTGTGTTCTCCCTCCTGTGCTGCAGGCCTCCCAGAGCCACATGAAGAGCAGAGGATCAGCAGCGTCCGCTTCAACACCAGCCGCTAGCAGCAGCCAGGACAGCGTTGCATTGATGTTGGACGGCATCAAGTCAGCAGTCCGATTCCAGAAAATGATATCTGAGGCTTGGCTCAAGgcAATAGAGTCTGTGGACGAAGAGGAGGACCATAAGGTAATAGATCTGCTGGTGCTGTTCATCCTCCATTCCACCAATGCCAACCAGAGCCGGCGGGGAGCGGAGAGGGTGCTGAAGGTGAAAGTGAGGGCTGGACTGATCCAGGACGCTCTGCTCCAGAGGACCTTCAGGGACTATGCTCAGGTCATGCGAGGGTATTTCCCCTCCATCCTGGCTCTGGCTCAGAGTTTGTTGCGCTCCCCTGACCCCTGCGTGGTGCCTTTTGGTGGACACATGTACCGACACTCATTCGTTGCTTTTGACTCTTACTGCCAACAGGAGGTGGTGGGCTCTTTAGTGACCCATGTGTGCAGTGGAGTGGGGGGGGAGGTGGACATGGCTCTGGAGCTGCTCTGCGGCCTCGTTACAGAGAAGCCCTCAGAAATGGCCCTGTATGCTGTTTTTGTCAAGGGAATCTTGGACTACATGGACAACCTCACACCCCAACAGATCCGCAGACTCTTCCACCTTCTTAGCAGACTGGCCTTTGGGCAACAGCAGCAGGGATCTCACATCCAGGATGACATGCACATAGTGATCCGCAAACAGCTCTCCAGCACTGTGCCCAAGTACAAGCGTATTGGCATCATTGGTGCTGTCATGATTGTAGGCAGCATGGGGGCCTTCAGGCCTAAAGTGAAGGAGTCACAGAATGGGTCGTTACCCAAGGAGACGTTCAGACAGGTGACGGCCCTGTTGGAGCTGGTGAAGTCTAGCAGTGAAAGCTCTCCTGAGGCTGCTGCTCTGTACTACGATGAACTGGCCAACCTGATCCTGAGCTCTGCCTTGCACACACAGGTGCAGGAAATGATCGGAAATAGTGTCCTAAATGACTTCCAGGAGGACTTTGTGGTGGATCTAGGGCCAGAAATATCGGGTCCCTTTCACTTTACGCCGCGCGTGATGTACAACCTGGAAGAAGGGGAGACTCCGGGAATTGCCATCAACCTGCTGCCTCTACTGGCCAAAGACATGCAGAACAAAGGAGAGCACAGTCAAACCAAGAAGGCGAACAAGCGAGtgtctcttctctgtctgtctccgttTTTTCGCCTCCTGAGACTCTGTGAGGAGAAACAGAACCAGGGAGACCTGGATGAGATTGACGGCCTGCTGGGCTGCCCTCTGATCCTaacagacatggatgtattgGAGAAAACGGAGAGCCTGTCAAAAACTGAGAGGGAGTTCCTCTGTACTTTGCTGTTTCACACCATCAACTGGCTCAGAGAGGTCATAAATGCATTCTGTAGACAAAAAGAAACCGAGATGAAGATGAAAGTGATGACCCGTCTGCAGAACATCACCTACCTTCAGACACTGTTGGAGAGGGTGTTAGCAGGAACACCTGGCTATGTTCCACCTGTTGCCAACTTTGATGGAGAATGCACAGATGGGGTTCTACTTAGTTCTGCTGCTCCTGTAAGTAAGGCAAAGAAAGATGGCAcaggaaagaagaggaaggcCCCTGGCAAGAATTCCTCAGAGAGCAGCTCTCAGCTTGAGGAACCAAATGAAGCAGAAAAAACTCAGCAGGAGCAACcagaaaaggagaaagaaaaggagatcCGTCAAGGTGTCAGTCTGGTGTCCTACAGACCGTTTTTCAGGGAGCTGGACATGGAAGTGCTCGGTGTGCTGCGGTGTGGCTTGCTGTCCCGCTCACTGCTGGACTCAGAACTCCACACCAAGGTGCAAGAAGAGGTTCTGCTGGGTCCCGCTGAGCTGGTGTTCCTGTTGGAGGATATGCTTCGCAAACTGGAGTTCAGTCTTACAGCTGCCCCTGCCAAGAGACTCCCTTTCTTTAAGGGAAGGGCAGATAAGAGCGTGGGTTTCTCCCATCTACAACAGAAGAGCTCCAAGGATATTGCTTCCTACTGCGTCCAGCTGCTGCCCACCCTCTGCTCACACCTGGAAAACTGCCACAACCATTTTCAGacACTGCTGTCTGAGAACAACGGCGTTGTGGACGGACCTGCCACAGATGTTCAGGAGCACCAACTGATGTCATCAGGCTACCAGCTGCTCCTGCAGGTCCTGAACTCCACCTTCAGCTGGTCTGGATTCAGCCAACCGGGGCAGCGGAGCTTACTGAAGAAGGCTCTTGGAGTTTTAGCTGAACGACTAAAAGGGGGAGGTAGTGAGTTGACCCTGGAGCAGCTTGTAAAACACAGCTTTGAGTATCTGGTGAACTTCGGCAGCACAATGCCAAGTCTCAGCACAGCCCTGTGTCTCTCCCAGCTTCTGTCCACTGTGTCTGAGAAAGGAGGGAACCCTGCTATCTACAGAGAGCAGACCGCTTCCCTCGCAAAACGTTTCCTGAGCCAAGACTGGGTGACAGCCAGCGGAGAGAAGGAGCGAGGGAACAAATTCAATGAAGCGCTTCACACTCTCCTAAGAATTTACCTGGGGCATGTCGATGATGTTCTGAAGGCAGTGGAGGAAATAGCAGGAGAAGGAATCACTGAGCTCCTCAATGCATCAAAAGATGAGAGATCTGCATCCTGGCCCACGCTCAACAGGCAGACATTCCTGGTGTTCTACAAAGTCTTGATGTCAGAGTTGGAAAAGGCCATCAGAAAGATTCCTGCTGGCAAAGTCAGTGACAACCCTGAGGCTCAGCGTGAGAAGCTGCTGACATGGAACCTTGCTGTCAGAGATTTTCATATCCTGGTCAACCTAGTTAAGGTTTTTGATTCTAGGCCGGTGCTCATTGCGTGCCTAAAGTATGGCCGCCTTTTCCTGGAGTCTTTCCTAAAGTTGGGGATGCCACTACTGGACAACAGTTTCAAAAGGCACATGGAGGATGTCCAGAGCCTGCTAAAAACCTTCCAGCTCAGCACACGGCAGCTCCATCACATGTGTGGACATTCTAAGATTCACCAGGATACAAGCCTGACCAACCACGTACCAGCTTTAAAGAAGTGCCTCGAGCAGTTTGTTTACAGAGTGAAGGCCATGCTGACACTCAACAACTGTCAGGAGGCGTTTTGGATTGGCAACCTGAAGAATCGCAACCTGAAGGGTGAAGAGATTCTTTCTCAGCGGTCACAAGGAAGTGATGAGGATGATGACgatggtgaggaggaggagcaatGTTCACCGCTGCCTCAGGACCAGTCAGAGGATGAGGCCCAGGAGACTGACTCAACAAAGGTCAACAGAGAGGACGATGTGGATCAAGATGATATTACAGATGACTCTGACTGAAAGAACCATAAACTGTTGGTTTTCATTTTAGACTTTTGCATTTGGGTCAAACCCCCATTTGTGGATCACATTTTGACGTTTGAAATGCCAGTTGTAGTGTCTTTACGTTAACACTTTCTAAATGTATTGAATACTGCTACTCAATGGGCAGTGTTCAGGTATAGGATCAATAACACCAGTATATAATCGCAATAACACTgcaagcacatttaaaaaagttcATGAGATGCTTTTATGTACTTctacaggttgttttttttctgttgaagATAAAACATGCCTAATAATTAGGTGTTTTACATTAGGTAGGGTTGTGAAAAAAAGTGCTATATGctttattgtatttgtttgccgacaaaataaaatatagattgttaaagaattacaa

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG:

id description
K10891 FANCD2; fanconi anemia group D2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52557 lncRNA upstream 4880 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 28397 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 62265 16517536 ~ 16522337 (+) False G39116
TU52514 lncRNA upstream 74417 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 332877 16235014 ~ 16251725 (+) True G39076
TU52617 lncRNA downstream 176996 16782411 ~ 16782618 (+) True G39195
TU52618 lncRNA downstream 179333 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 180416 16785831 ~ 16786051 (+) True G39197
TU52633 lncRNA downstream 213331 16818746 ~ 16823256 (+) True G39210
TU52709 lncRNA downstream 362441 16967856 ~ 17046696 (+) True LOC120556687
XM_039796552.1 mRNA upstream 6387 16566701 ~ 16578215 (+) True usp4
XM_039796553.1 mRNA upstream 18207 16562865 ~ 16566395 (+) True emc3
XM_039798001.1 mRNA upstream 417464 16161960 ~ 16167138 (+) True arpc4
XM_039798595.1 mRNA upstream 427093 16149125 ~ 16157509 (+) False LOC120557902
XM_039796384.1 mRNA upstream 524272 16049678 ~ 16060330 (+) True eefsec
XM_039796559.1 mRNA downstream 1036 16606451 ~ 16681516 (+) True tex264a
XM_039796275.1 mRNA downstream 78393 16683808 ~ 16716227 (+) True grm2a
XM_039796276.1 mRNA downstream 78393 16683808 ~ 16715800 (+) False grm2a
XM_039798960.1 mRNA downstream 112865 16718280 ~ 16722817 (+) True parp3
XM_039796316.1 mRNA downstream 118744 16724159 ~ 16730016 (+) True gpr61l
TU52524 other upstream 41022 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 149373 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 534172 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 618495 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 936751 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 506698 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 587806 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 587806 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 587806 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 587806 17193221 ~ 17198217 (+) False srsf3b

Expression Profile