RNA id: XM_039796559.1


Basic Information

Item Value
RNA id XM_039796559.1
length 2071
RNA type mRNA
GC content 0.46
exon number 4
gene id tex264a
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16606451 ~ 16681516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTGATTTAATTCTGGTGCTCTTGTTAGTCGTGCTCCTGGTGTGTTTGATTGTGACAGTTGGTGGCTTCCTGCTATACTCGGGACTACTGTGTGATGTGATTATAAAGACTGGGCCACCTCCTGTCAAAAGTGTTACCATTGCTTATAAGTTCAGAGAGGGATCATACAAGGACTGCGGTGCAGCCTACACAGAGAGCTGCAGCATTGGGCCACAGCTGAGCACCGTCGGTGTCTTCTACGATGACCCCAAGCAGAGGCCAGCAGAGAAATGTCGATACGTGGTGGGCAGTGTCCTGTGTGAGGGTGAAGAGAAGCCAGATGAAGAACTGCAGAAGATGTATGAGAAGTTTGGCTTCAAGGTGTTTTCTCTACCTGAAGTGAGCCACGCTGTGACCACCAGCTTCCCCTGCTCCACCCCTTTGTCTCACGTGCTGGGACCTTACAGGGTCTACCCCAGGCTCGCTTCCTACATTGAGgAGAGGAAGCTGTGTGCATTCCCAACCATTGAGATCTGTAGCTCAGATGTCATCAACTATATGGTTCCACTGTCTCGCCAGACTGACTTCTTTGTTCCAGAGATGAAGGAGGAGGTTACAACAGATGTTAAAGAAGAGGACTCTGACGAGGACAGAGGAACTGACATTACAGGTGCAGACTCCCACAGTGATGTGAGTTCAGTGAGCGGCGGCGTGCCctgggacagcagagagacatCCCTGGCTGCTTCCACAGCCGCCTCCCTGGCATCTTCCCTGCCTCTGAGGGACGTAATGGATGCAAATGAAGACATTAAGCACAGGGACAACAGCGAGAGGGGCTCAAACGAGTCAATGGGCAGCGGCTCGTCCTTTGAGGAGCTTGACATGGatcaggaggagcaggaggcaggagaagagagggaagagaaaggAGATGGAGAAGAGGCGGAGGTCCCTGAGGGTGAAGACGGAGCAAGAGCAGCAGTTGAACTGGTGGCTGAGAAGAAGGAACCCTTGGGGGAAGGAGAGGAGTAGGGAGGACGCTgaagagaaaagagatgagGCCATGTAACCCCGGCCTGCTAGAGAGTTTCTCAGTTGTCGCTGGTTATCTGTCATGTAATCATGTTGGTGGATCTAAAGCTGTTTATGCCGTGACCAACATGCCGTATCTCAGCGCCTTCTAATTCTCTTTTTGAAGCCTGTACCATGTTATACTGTAATCtcattttttataattactGATCCTATATTTAAACTCTGTCAGGATACAACAGACAGTTCATTTGGTTAAGTCTTCTTGAGTAAACCTAATTTTCTCTGCACATAGTGTGTGGCAAATGAGAGGCAAGATTTGTTCACTATATATTTCATTTCAAACTGTAATCCTGTGTGAATCCCCACCATTCCTTGTGACACTTCAGTTTAAGATTAACATCAGAGGAAGGACATTGACGCCAGCTATCCTGGATCATCATACAGCATCTTTTTTCCCATGTGTAACAGTTGATATTGTACCCCACTTCCCATGTCCTGACAATTTGTCTGTAATGTGTTGGTGTGCATTACCCGACTTTGGTGTCTCGATATCCAGTAACGATGGGGTGAAAATGTGCAGGACCTAATGCCGTAAAAATGTTGACAGACCTACTGTATTTCAgtgtgttgttaaaaaaaaaaaaaaaaaatcctatcaCACAGGGGATAATTCAGAAGTCTGAGGCAGAAAGAACTTTTATCAACACCAGTAACATCACCAAAGCCTACAAGTCACCAGGACTAGGAATTACAGTAAAATGCAATTCAAAGATGCAAACTTTTCCCCTTGGAGACTGTACAGAACATTTTATTGTCACCCTTTTGCTCAGATAACTGCTTTAGATTTTAACGTGATATTCTCTTCTATAGTCGATTTGTTGAACCAGTCTACAGTTCTGTTTGTAGCCAAAATTCACTCTTTTCCAGAGACTAGTTGTGATATGTTCGTAGGTTGAAATTGTTGGTGCTGTGAGACATTGGAAGTAATGTTCAGCACATTGCCGTggttgtgtctttctgtctgtaatAAAATTTTCCAATGAAAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52557 lncRNA upstream 26729 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 50246 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 84114 16517536 ~ 16522337 (+) False G39116
TU52514 lncRNA upstream 96266 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 354726 16235014 ~ 16251725 (+) True G39076
TU52617 lncRNA downstream 100895 16782411 ~ 16782618 (+) True G39195
TU52618 lncRNA downstream 103232 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 104315 16785831 ~ 16786051 (+) True G39197
TU52633 lncRNA downstream 137230 16818746 ~ 16823256 (+) True G39210
TU52709 lncRNA downstream 286340 16967856 ~ 17046696 (+) True LOC120556687
XM_039796555.1 mRNA upstream 1036 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA upstream 1036 16584602 ~ 16605415 (+) True fancd2
XM_039796558.1 mRNA upstream 1036 16584602 ~ 16605415 (+) False fancd2
XM_039796552.1 mRNA upstream 28236 16566701 ~ 16578215 (+) True usp4
XM_039796553.1 mRNA upstream 40056 16562865 ~ 16566395 (+) True emc3
XM_039796275.1 mRNA downstream 2292 16683808 ~ 16716227 (+) True grm2a
XM_039796276.1 mRNA downstream 2292 16683808 ~ 16715800 (+) False grm2a
XM_039798960.1 mRNA downstream 36764 16718280 ~ 16722817 (+) True parp3
XM_039796316.1 mRNA downstream 42643 16724159 ~ 16730016 (+) True gpr61l
XM_039798588.1 mRNA downstream 51870 16733386 ~ 16735306 (+) True LOC120557897
TU52524 other upstream 62871 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 171222 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 556021 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 640344 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 958600 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 430597 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 511705 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 511705 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 511705 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 511705 17193221 ~ 17198217 (+) False srsf3b

Expression Profile