RNA id: XM_039796613.1


Basic Information

Item Value
RNA id XM_039796613.1
length 1691
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120556840
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17769486 ~ 17780828 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATGAAACAATTTACACATTAACATGACATCGCTGCAGCATACATATCCTGATTACCCAGGTTGTTCTGAAAACAAATATGTTTATTGATTGTGCATAACAGAGCATTAAGTGCCTTTACAATCCAGCAAAAGGTGGGCGATCGAGGATCATCATTTAGAGGAATTACTCTTTGTTAAGCCCAGATCTGGAGGACTTATGCTTAGACTGTGGGCATCTAATCTCAGCTGTCACACTCAAGCAGTGAGATTTTGAACTTCTAGAAGCACCGGGACAAGAAGAAACTACCTGACCACTTATTTAGTGTTACATCCATGCAACCAtctgtttttttccaaaatgctTCCTATGTGGGCCCACATGGGGAACCCCCTCTGTCACGCATTGGATTCATCATTCTCTCCATCATTATGGCTATTTTCACCGGTCCAGCCATCATACTCAACGCTACAGTGATCATTGTATCTCTCATGCACAAGCAGCTGAGGCAGCCGCTCAACTTCGCTCTGGTGAACATGGCTGTGGCTGACCTGGGCACAGCCATGACCGGAGGGGTGCTGTCTGTGGTCAACAACGCCCAGGGGTACTTCTCCCTGGGAAGAACAGGGTGTGTGATGGAGGGCTTTGCAGTGTCCTTGTTTGGCATTACATCTCTGTGCACAGTTGCTCTGATCGCAGTGGAGAGGATGTTTGTTGTATGTAAGCCATTGGGGTATATGACCTTCCAAAAAAAGCATGCAGTTGGAGGTATTGCCTTATCTTGGCTGTGGTCCCTGACTTGGAACTTGCCTCCCCTGTTTGGCTGGGGCAGGTATGAGCTGGAGGGCGTTGGGACGTCCTGTGCACCAGACTGGCACAACCGAGACCCTCAAAATGTCTCCTACATCCTGGCTTACTTTGCAGTGTGCTTTGCAGTTCCCTTTGCCATTATCTTGGCATCCTATGGGAAGCTGATGTGGACATTACACCAGGTATCAAAGATGGCCTGTCTGGAAGGCGGTGCAGTAGCTAAAGGAGAGCTGAAGGTGGCGTACATGGTGGTTCTGATGGTCCTGACATTCCTGATCAGTTGGTTGCCTTATGCCAGTCTGGCCATGCTGGTGGTCTACAACCCTGATGTGGAGATTCACCCGCTGGTAGGCACAGTGCCTGTTTACTTGGCCAAGAGCAGCACTGTATACAATCCTATCATCTACATCTACCTCAACAAAAAGTTTCGTAAATACACAGTGCCCTTCCTACTGTGTGGGAGAGAGCCCTCGATGGACGATGATAATTCAGGGGCAACGACTGTCGAGATTTCAACCAGCAAAGTGTCTCCCGCCTGAAAGTACACACACCTACAACTCTATCTATTAAAAATAATGTTGGTTTAAATGTTTACAACACAATTTACACATCCTTTTTGTCACTAGCTACACACACATAGTGGATCCATGACTACTGGTGTTTGAATGTTTGTATTTGGGTGTTTTGCTGTGAATTGGGCATTTattcttgttttctttgttaATTCAGTTTTTCTGCTTCGGTACCCAGAGCTCCTTGACTAGAGATGAGCTCAAAAAGACCAGGGATACATCTCCAGCGAATTTCATTTAATactttgctttattgtttattccCTTCTAATATGTTTATTGTACAAACTtaatttggcaataaatctttttCAAGTTCAGATTTTAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53197 lncRNA upstream 41562 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 48750 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 55120 17715412 ~ 17722348 (+) True G39633
TU53185 lncRNA upstream 86892 17689804 ~ 17690576 (+) True G39630
TU53180 lncRNA upstream 90887 17685471 ~ 17686581 (+) False G39626
TU53220 lncRNA downstream 4431 17785259 ~ 17785810 (+) True G39654
TU53269 lncRNA downstream 71688 17852516 ~ 17853366 (+) True G39665
TU53572 lncRNA downstream 668019 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 763327 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 789763 18570591 ~ 18570983 (+) True G39925
XM_039796609.1 mRNA upstream 43457 17726810 ~ 17734011 (+) False LOC120556838
XM_039796606.1 mRNA upstream 43458 17720441 ~ 17734010 (+) True LOC120556838
XM_039796610.1 mRNA upstream 43460 17726810 ~ 17734008 (+) False LOC120556838
XM_039796611.1 mRNA upstream 43460 17726810 ~ 17734008 (+) False LOC120556838
XM_039796605.1 mRNA upstream 43461 17726810 ~ 17734007 (+) False LOC120556838
XM_039797629.1 mRNA downstream 80518 17861346 ~ 17870786 (+) True LOC120557367
XM_039797628.1 mRNA downstream 93276 17874104 ~ 17888579 (+) True LOC120557366
XM_039798374.1 mRNA downstream 108401 17889229 ~ 17894265 (+) True card19
XM_039797862.1 mRNA downstream 123872 17904700 ~ 17930118 (+) True wnk2
XM_039797864.1 mRNA downstream 123872 17904700 ~ 17930118 (+) False wnk2
TU53107 other upstream 168252 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 579251 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 112465 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 123870 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 408787 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 408787 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 434878 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile