RNA id: TCONS_00073788


Basic Information

Item Value
RNA id TCONS_00073788
length 79
RNA type miRNA
GC content 0.41
exon number 1
gene id XLOC_037561
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1642605 ~ 1649744 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCAAGTAAAGTTCTGTGATACACTCCGACTCTGAATGTTTGCAGTCAGTGCATTACAGAACTTTGTTTTGGGAGT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0031369 translation initiation factor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000118007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075257 lncRNA downstream 339260 1302937 ~ 1305423 (-) True XLOC_037554
TCONS_00075256 lncRNA downstream 463229 1177901 ~ 1181454 (-) True XLOC_037551
TCONS_00075255 lncRNA downstream 616033 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073771 lncRNA downstream 755116 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075254 lncRNA downstream 871027 772863 ~ 773656 (-) True XLOC_037542
TCONS_00075273 lncRNA upstream 286667 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00075274 lncRNA upstream 286667 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075276 lncRNA upstream 286667 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA upstream 286667 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075277 lncRNA upstream 506161 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00073786 mRNA downstream 4718 1629307 ~ 1639965 (-) True XLOC_037560
TCONS_00073785 mRNA downstream 4799 1589757 ~ 1639884 (-) False XLOC_037560
TCONS_00073784 mRNA downstream 40082 1589672 ~ 1604601 (-) False XLOC_037560
TCONS_00073783 mRNA downstream 144962 1485234 ~ 1499721 (-) True XLOC_037559
TCONS_00073782 mRNA downstream 160481 1464861 ~ 1484202 (-) True XLOC_037557
TCONS_00073789 mRNA upstream 48165 1692926 ~ 1703801 (-) False XLOC_037562
TCONS_00073790 mRNA upstream 48608 1693369 ~ 1703801 (-) False XLOC_037562
TCONS_00073791 mRNA upstream 48774 1693535 ~ 1702648 (-) False XLOC_037562
TCONS_00073792 mRNA upstream 50560 1695321 ~ 1703761 (-) True XLOC_037562
TCONS_00073795 mRNA upstream 292288 1937049 ~ 1939232 (-) False XLOC_037565
TCONS_00073777 other downstream 265193 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 641128 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073793 other upstream 104158 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 286679 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073798 other upstream 294224 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 308195 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073801 other upstream 308260 1953021 ~ 1955923 (-) True XLOC_037566