RNA id: XM_039796666.1


Basic Information

Item Value
RNA id XM_039796666.1
length 9693
RNA type mRNA
GC content 0.49
exon number 62
gene id itpr1b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6648315 ~ 6753630 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTAGAAGCGGATTGTTGCCGAGGACGCAGTCTGCTGTCAGAGATAACCGCCGCTCAGCCTGCTCTTACCTGGACTTTCACTACCATGGACTTAACCGAGGATAGCGCTGTGGAAATGATCCTGTGCTGACCCACTTCTTCACACGTTTCTTTCTCTCGCTGTCTTTGACGCCTTCTTTCATTTGTGCCAGGTGTAGTCAACCCTGAGGAACCATGTCGGACAAGATGTCCAGTTTCCTCCATATTGGGGACGTTTGTTCCCTGTATGCAGAGGGCTCCACCAGTGGATTTATCAGCACTTTAGGGCTTGTGGATGACCGCTGTGTGGTACAACCAGACACAGGCGACCTCAACAACCCACCCAAGAAATTCAGAGACTGCCTTTTCAAACTGTGTCCAATGAACAGATACTCAGCACAGAAACAGTTCTGGAAGGCAGCAAAACCTGGAGGCAACAGCACCACTGACACAGTCCTCCtcaccaaactccatCATGCTGCTGACCTGGAGAAGAAACAGAATGAGTCCGAAAACCGCAAGCTGCTGGGATCTGTCATCCAGTATGGAAATGTCATTCAGTTGCTGCACTTGAAAAGCAATAAATACCTGACAGTGAACAAGCGCCTCCCTGCACTGTTGGAGAAGAATGCCATGAGAGTGACTCTGGACTCAGCGGGAAATGAGGGATCCTGGTTCTACATCCAGCCCTTCTACAAGCTGCGATCCCTGGGAGACAGTGTGGTGATTGGAGACAAAGTGGTCCTTAACCCTGTAAATGCGGGTCAGCCTCTGCATGCTAGCAGCCACCAGCTAGTTGACAACCCAGGATGCAATGAGGTCAATTCTGTAAATTGCAACACGAGTTGGAAAGTTGTTCTGTTCATGAAATGGAGTGACAACAAGGAAACAATACTCAAAGGGGGTGATGTAGTCCGGTTGTTCCATGCAGAGCAGGAGAAGTTCCTGACTTGTGACGACCACAGAAAGAAGCAGTATGTTTTTCTTAGAACAACCGGCCGACAGTCTGCCACTTCTGCCACCAGCAGCAAAGCACTGTGGGAAGTAGAGGTGGTCCACCATGACCCATGTAGGGGAGGTGCAGGCTACTGGAACAGCCTGTTCAGGTTTAAACACTTGGCCACAGGGTGGTATTTGGCTGCTGAGATGGGTGAGGTGAATCCAGACTTTGAGGAGGAGAGTGCTGAGCAGCGGTCCTCGCTGGATGCAGATAATGAAGCTTTACGAGGTCGTCTGCGAGCTCCACAAGAGAAGATCATGTATACGTTGGTGCCAGTTCCGGACGGCATGGACATCTCCTCCATCTTTGAGCTGGACCCTACCACTCTAAGAGGCGGAGACTCCATGGTGCCCAgGAGCTCCTATGTGAGGCTAAGACACTTGTGCACCAACACGTGGGTTCACAGCACCAACAACCCCATTGACAAAGAGGAGGAGAAACCTGTTATGTTGAGGattGGAACATCAGCAGTAAAAGAGGACAAGGAAGCTTTTGCCATTGTGCCAGTGCCACCAGCAGAAGTGCGTGATTTAGACTTTGCCAATGACGCGAGTAAAGTGCTGGCGTCTATTGCTGGCAAGCTTGAAAAGGGCACCATTACACAAAATGAAAGAAGGTTTGTCACCAAGCTGCTGGAGGATCTAGTTTTCTTTGTGGTGGACATCCCCAACAGTGGGCAGGATGTTTTGGAGATCATGGTTAACAAACCCAACAGAGAAAGGCAGAAACTCATGAGAGAGCAAAATATCCTGAAGCAGATTTTCAAACTCCTCCAAGCCCCCTTCACAGACAGTGGCGATGGTCCCATGCTGCGACTGGAGGAGCTTGGAGACCAGCGCCACGCTCCGTTTAGACATATTTGCAGGCTTTGCTACAGAGTGTTACGCCATTCCCAGCAGGATTACAGGAAGAACCAGGAATACATAGCCAAACAATTCCGCTTCATGCAGAAGCAGATAGGATATGATGTGCTGGCAGAAGACACAATAACAGCTCTGCTCCATAACAACCGGAAGCTGCTGGAGAAACATATCACTGCAGCCGAGATAGACACATTTGTGACTCTAGTGCGGAAGAACCGGGAGCCGAGGTTTCTGGACTACCTATCAGATCTCTGCGTTTCGATGCAAAAGTCCATCCCTGTGACACAGGAGCTCATCTGCAACGCAGTACTGGACCCTACCAATGCTGACATTCTCATCGAAACCAAATTGGTCCTGTCGAGGTTTGAGATTGAGACCGCGACAATTGAAGATAGTCCAGTGGAGgcagaggatgaagaggaggtcTGGCTGTTCTGGAAAGACAATTGTAAGGAGATCCGGAGTAAGAGTGTCCGGGAGTTGGCTCAGGATGCAAAGGAGGGTCAGAAGGATGACCAGGAGGTGGTCAGCTACTACAGGTGCCAGCTCAACCTCTTTGCTCGGATGTGTCTGGACCGCCAGTACCTGGCTATCAACAAGATTTCTGGTCAGCTGGATGTGGATTTGATCCTGCGCTGTATGTCTGATGAGGACCTGCCCTTTGACTTGCGGGCGTCTTTCTGCCGCCTGATGCTGCACATGCATGTGGACCGTGACCCTCAGGAGCAGGTCACACCTGTCAAATATGCCCGTCTTTGGTCTGAGATTCCCTCTAAGATTGCTATTGATGACTATGACAACGATGGAACCACCAGAGATGAGATCAAAGAGCGCTTCTGCCTCACAATGGATTTTGTGGAGAACTACCTGAGAGAGGTGGTGTCACAGAACATCCCCTTCACTGACAAGGAGAAAAACAAGCTTACCTTTGAGGTAGTGAACCTGGCTAGGAACCTCATATACTTTGGTTTCTACAACTTTAGCGACCTGCTTCGACTGACAAAGATCTTACTGAACATTTTAGACTGTGTCCATGTCAGCACCATTTACCCCATCGACAAGATTGAGAAGGGAGAGGAAAGCAAAGCTGGCAGTAATGTGATGAAGTCCATTCATGGAGTCGGGGAGTTGATGACCCAGGTAGTGCTGCGAGGAGGCGGCTTGTTGCCCACCACACCAACTCATCATCAGCCTGAGGGAGATGTGGTTAAAACCCAGATAGAACCAGAGAGAGAAGACATCATGGTCATGGACACAAAGCTCAAAGTCATTGAGATACTACAGTTCATTTTGAATGAACGGCTAGACTACAGGATCTCCTGCCTGCTTTGTATTTTCAAACGGGAGTTTGATGAGAACAACCCACAAGCAGACAACGCTGCCAGTCCGAACGGATCTAATAATGTCACAGGAAATCTTGACTTTGAGAACATTGAAGAACAGGCAGAGGGGATTTTTGGAGGAAGTGAGGAGAACACTCCGCTGGACCTGGATGACCACGGTGGCCGTACATTCCTAAGGGTCCTGCTGCACCTGACCATGCATGATTACCCTCCTCTGGTGTCTGGAGCGCTCCACCTGCTCTTCAGACACTTCAGCCAGAGGCAGGAGGTCCTCATGGCCTTCAAACAAGTCCAACTGCTGGTGACCAGTCAAGATGTAGATAACTACAAGCAGATCAAGTCCGATCTGGACCAGCTGCGTTCTATTGTAGAGAAGTCTGAACTGTGGGTTTATAAGAGGCAAGGAGAAGATGGGATGGACGGAGATGGACCTTCAGAgtctgaaaacaaaaataagGGAGACTCACCTGGTTCAGACAAGAAGAAGTCCGAAAGCACCAGCAGTTACAACTACAGGGTCGTAAAAGAGatTCTGCTGCGTCTCAGTAAGCTGTGTGTCAAGGAGGGGAGTTCagggaagaagagtaagaaaCAGCAGCAGAGGCTCCTGAGGAACATGGGAGCCCACAGTGTAGTGCTGGAGCTCCTACAGATCCCCTATGAGAAGGATGAGGATATCCGGATGGAGGAGATCATGAAACTGGCTCACGAGTTCCTGCAGAATTTCTGTGCAGGGAATCAGCCGAATCAGACTCTTCTCCACAAGCATATTAACCTGTTTCTCAACCCAGGGATTCTTGAGGCAGTCACCATGCAGCACATCTTCATGAATAACTTCCAGCTGTGCAGTGAGATCAACGAACGAGTGGTTCAGCACTTTGTCCACTGCACTGAGACTCACGGTCGACATGTGCAATATCTCAAGTTCCTGCAGACCATTGTCAAGGCCGAGAATAAGTTCATCAAGAAGTGTCAGGACATCGTCATGGCTGAGCTGGTGAACTCTGGCGAGGACGTACTGGTCTTCTACAACGACCGTGCCTCCTTCCAGACCCTAGTCCAGATGATGCGTTCAGAGCGGGACCGCATGGATGAAAACAGCCCTCTAATGTACCACATTCACTTGGTGGAACTGCTGGCTGTCTGCACTGAGGGCAAGAACGTCTACACTGAGATCAAGTGTAACTCCCTGCTGCCCCTGGATGATATTGTACGAGTCGTCACCCATGAAGACTGTATCCCTGAGGTGAAGATTGCCTATATCAACTTCCTGAACCACTGCTATGTCGACACAGAGGTGGAGATGAAGGAAATTTATACTTCCAACCATATGTGGAAGCTGTTTGAGAACTTCCTGGTGGACATCTGTAGGGTGTGCAACAACACCAGTGACAGGAAGCATGCAGATACCATACTGGAGCGTTATGTAACGGAGACAGTCATGAGCATTGTCACATGTTTCTTTAGCTCTCCTTTCTCTGACCAGAGCACAAGCCTGCAGGCCGCCATTCTTGGAAAGATAACTGAGACTCGTCAGCCAGTATTTGTGCAACTGCTCCAGGGAGTTTTCAGGGTGTACCACTGTAACTGGCTTAACCCTGTTCAGAAGGCCTCAGTGGAGGCTTGCATTAAAGTACTCTCCGACGTGGCTAAAAGCAGAGCCATTGCCATCCCAGTGGACTTGGACAGTCAGGTGAACAACTTGTTTGTCAAGTCCAATAATGTTGTGCAGAAGAGCATCCTCAGCTGGAGACTGTCTGCCAAGAACACCACCAGACGAGACTCCTGCCTGACTTCGTCTAAGGACTACAGAAACATCATTGAGAGGCTACAGGACATAGTGTCAGCGCTGGAGGACCGGCTGAGGCCGCTAGTCCAAGCTGAGCACTCAGTGCTGGTGGATGTACTGCATCGTCCAGAGCTCCTCTTCCCTGAGAACACAGAAGCTCGCAAGAAATGTGAAAGTGGAGGATTCATATCAAAATTGATCAAACACACCAAGCAGTTGCTGGAGGAGAATGAAGAGCGTCTGTGCATCAAAGTACTGCAGACACTGAGGGAAATGATGACAAAAGACCGGGGCTATGGGGAGAAGCTGATTGCCTTTGATGATGAAATGGATGTGGCTGAGCTGGCACCTCCGCCCGAGCCCGAAGTCCCTGCCGAGGAGCTTGATCCCAACCAGCCACAGAAGCAACTGGAGGATCAAAGGAGGGGCGAAGCTCTGCGGCAGATCTTGGTCAATCGATACTATGGGAACATCAAACCTGGCCCGAGGAGAGAGAGCCTAACAACCTTCAGCAACGGTCCACTCTCTCCTGGAGCGCAGGGGAAATCacctacagTTGTCAGTTCTGGGGTCGGAGGTCGAGGAGAGCTGAGTTTGGCGGAGGTCCAGTGCCACCTGGACAAAGAAGGCGCTTCTGATCTGGTCATTGATCTCATCATGAATGCTACCAGTGACCGGATCTTCCAGGAGAGCATACTTTTGGCCATCGCTCTGCTGGAGGGTGGAAACACGGTCATCCAGCGGTCATTCTACCAACGTTTAACTGGGGACAACAAGTCAGAAAAATTCTTCAAGGTGTTTTATGAGCGCATGAAGCTGGCCCAGCAGGAGATCAAAGCCACTGTGACGGTCAATACTAGTGACCTGGGCAGCAAGAAGAAGGATGAGGAGCCAGCAGACAAAGACACGCCAGCACGCAAGAAAGTCAAAGACATGCCGGTGGTGGCGGTCGTGACTGAGGAGGTGAAGGAGCAGCTAGTGGAGGCCGCCGTTGTCACCAAGAAGGCCTTCACCACCTACCGCCGCGAGGTCGAAGCCGAAGAGCACCAAGCGGCCGCTGACGGCACTCCCGTCCCGGCTGCCGATAAGAGCCAGGAGGAAGGCGAGATGAGcgtcatcatcaccatcatgcAGCCCATCTTGCGCCTCATGCAGCTGCTCTGTGAGAACCACAACAGAGATCTGCAGAACTTTCTGCGTAACCAGAATAACAAGAACAACTATAATCTTGTGTGTGAGACACTTCAGTTCCTGGACTGTATCTGTGGCAGCACCACAGGCGGACTGGGGCTGCTGGGACTCTACATAAATGAGAAGAACGTAGGACTCATCAACCAGACTGTGGAGAGCCTGACTGAGTATTGCCAAGGTCCCTGTCATGAGAACCAGAACTGCATTGCCACTCATGAATGCAACGGTATTGACATCATCATCGCTCTCATCCTCAATGACATCAACCCCCTTGGCAAGAAGAGGATGGATCTGGTGCTGGAACTCAAAAATAACGCCTCAAAGCTTCTTCTTGCAATTATGGAGAGTCGCCATGACAGCGAGAACGCCGAGAGGATACTGTACAACATGAGGCCTAAAGAGCTGGTGGAAGTGATCAAAAAGGCCTACATGCAGGGTGAGATAGAGGTGGAGGAGCCACAGGAGGGTgaagatggagaggaggagcACTCTGCATCTCCGCGCAATGTTGGTCATAATATCTACATCTTGGCGCATCAGTTAGCTCGTCACAACAAGGAACTGCAGGCTATGTTGAAGCCAGGGGGGACATATGGAGAGGGTGATGAGGCCCTGGAATTCTAtgccaaacacacagctcagaTTGAGATTGTACGGCTGGATCGTACCATGGAGCAGATAGTCTTCCCTGTGCCTAACATCTGCGAGTTCCTCACCCAAGAGTCCAAGCTGCGTGTCTACTACACCACGGAGCGGGATGAGCAAGGCAGTAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTCAATGAGATGAATTGGCAGAAGAAGCTGCGAGGTACTCAAGAGGCTGCTGGTGACACAAACACGGTTCCCTCTCAGCCCATCCTGTACTGGTGCTCCAGGAACATGTCGTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTGCTCATGAACCTGCTCGTGGCCTTCTTCTACCCGCTGGAGGGTGTCCGTGGAGGTACCCTGGAGCCCCATCTGTCTGCCCTGCTGTGGATGGCCATGCTGGTTTCTCTGGCTATTGTCATCGTCTTGCCTCAGCCTCACGGTATCCGGGCACTCATTGCTTCAACCATCCTGCGCCTGATCTTCTCTGTAGGCCTGGAGCCCACGTTGCTCCTGCTGGGGGGTTTCAATTTATGTAATAAGGTGATCTTCCTTACGAGCTTCGTCGGGAACCGTGGAACCTTCACACGTGGCTACATAGCCATGATCATGGATGTGGAGTTCCTGTACCACCTGCTCTACCTGATTATCTGTAGCCTGGGGGTCTTCGTTCATGTCTTCTTTTACAGCCTGCTACTCTTCGATCTGGTTTACCGAGAAGAGACCTTGCTGAACGTAATAAAGAGTGTGACCCGCAATGGGCGCTCCATTGTTCTGACAGCTGTGCTGGCTCTCATCCTCGTCTACCTCTTCTCCATTGTGGGCTATATCTTCTTCAAAGACGATTTCATTTTGGCTGTCGACAGGATACCCAACAAAACACTAGAGCATGGAGCCAGTATGGTGGGAGAGTTCTTCTCTGGTGGAGTGTGCCAAAAAGAGAATGGGGAGAACTGTTCGGCAGAGGCCGTGATGGATGCTTCCCTTGCCATCCAGCCGTCAGCGGTGGTGATCGAGGACAAGGAGCGATCATGTGACTCCCTGCTCATGTGCATTGTCACAGTATTAAGTCACGGCCTCAGGAGTGGAGGAGGTGTTGGGGATGTCCTGCGGAAGCCATCCAAAGAGGAGCCCCTCTTTGCAGCCAGGGTTATCTACGACATGCTCTTCTTCTTCATGGTCATCATCATTGTCCTCAACCTCATCTTTGGTGTCATCATCGACACATTTGCTGACCTGAGGAGTGAGAAgcagaaaaaagaggaaatccTGAAGacaacatgttttatttgcgGTTTGGAGAGAGACAAGTTTGACAATAAGACGGTGACCTTTGAAGAACACATCAAAGTTGAGCACAACATGTGGCACTACTTGTTCTTCATCGTCCTGGTGAAGGTGAAGGATTCCACAGAGTACACTGGCCCTGAGAGCTACGTGGCCGAAATGATCAGGGAGCACAACTTGGACTGGTTCCCACGGATGCGGGCCATGTCCTTGGTCAGCAGCGATGCAGACGGGGAGCAGAACGAGATCAGAAACCTGCAGGAGAAGCTGGAGTCCACCATGAAACTGGTGTCCAACCTTTCAGGCCAGCTAACAGAGCTCAAAGAACAGATGACCGAACAGAGGAAGCAGAAGCAGCGCATTGGCCTGTTGGGACACCCTCAGCACATGAACGTCAACCCCCAGCAGCCTGCATAAGGTTATGTGGCACGGCCATGAAGCAGCTGGACAGAGTGTGCATTTCCCACTCAGCGAATGCACATAATGTATACTGCTCGGAGTGTGAGTGTAGGGAAATACTGTAACATACAGTAGGTAGTCATAAGGCGACGTGTAGCTCTACCCCACGCATGTGTTACTCCAAACAGTAACACTCACCCACCTCGTTGTGTTCAGTCCAGTTGGAATTGGTGCCAAATGTTTTCTTTGTAGAAATAAATTGGATTTCTCAACACATGGCCTTTACTGGTTGAACTTGAAACACGATATAGCTGACTGGACAGGAGGAATTAGtcccatttgtttgtttattattttatttgaatgttttctaTTTATATTTCTAGCATAACAAGCAGTATTAAGTGTCTTATTTTTGTATGTTGTGCAATATATTAACTTAAATATGCAGCCTCATTGGTGTGTGGATTTAAGTTCCATCAATCTTATTTAAAAGCGTGGGCCAATTTTTTGGTTGTACTTATTGTCTCTGGATAAAATAGGGAGTAGTTGGTTGTCTTTACTTACATAAATATAGAGATAATATTTAATAAGCTGGCTTActctattttaatttttttttcttgtgcatAATTCTTGAGTGTCAAGTGCACTCAATAGAGATAGTATATTGTGAGAGCAATATATACAGATAGTTTTCTTTCACCTGTGTAAATCCAATTTTGGTTTGATTGATTTCTTATTTAATTGGGTTCTAAAGGACATTTAGAATGTATTTGACTTGTCGGTCAAATATActgtgtaatgtgtttagtATCACTCATGCTATTACAATTTGCTCAGGAGTCTTTTACTGTAATAAGCGTCTTTAGCATAATTTCTTGTTTGGCAGCAAACATGTTCCATTTGTGcctgtttttgtctttaaagTCTGACACACGTTTGCTGCTTGTGCAGAGTCACTAACTTGTATCTCTTTTTTTGGACTACTATGTGTACATAAGGTTTGTTGCTTATCGTTGCTTTTGTATAGAAAAATGAGATGGAGAATGAAACCGTTCCTCCTGAATGTTAAGATTAACTAAAAATCTAAGCACTGTCAATTTGTATATTAAAGTagaattatttaataaaattgATGTAATAATCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48649 lncRNA upstream 67012 6578980 ~ 6581303 (+) True LOC120556885
XR_005638905.1 lncRNA upstream 67167 6578980 ~ 6581148 (+) False LOC120556885
TU48648 lncRNA upstream 73968 6574146 ~ 6574347 (+) True G36299
TU48637 lncRNA upstream 104241 6543467 ~ 6544074 (+) True G36288
TU48563 lncRNA upstream 215206 6429507 ~ 6433109 (+) True G36231
TU48723 lncRNA downstream 19106 6772736 ~ 6773170 (+) True G36353
TU48740 lncRNA downstream 194449 6948079 ~ 6951049 (+) True G36368
TU48741 lncRNA downstream 199822 6953452 ~ 6953907 (+) True G36369
TU48742 lncRNA downstream 201903 6955533 ~ 6955855 (+) True G36370
TU48783 lncRNA downstream 360819 7114449 ~ 7117220 (+) True G36408
XM_039796368.1 mRNA upstream 9792 6635280 ~ 6638523 (+) True setmar
XM_039799097.1 mRNA upstream 29100 6605370 ~ 6619215 (+) True lrrn1
XM_039796839.1 mRNA upstream 106884 6537541 ~ 6541431 (+) True si:dkey-178o16.4
XM_039796838.1 mRNA upstream 110891 6529451 ~ 6537424 (+) False trnt1
XM_039798871.1 mRNA downstream 3314 6756944 ~ 6760482 (+) True bhlhe40
XM_039796293.1 mRNA downstream 13382 6767012 ~ 6770275 (+) True LOC120556653
XM_039798415.1 mRNA downstream 22096 6775726 ~ 6786267 (+) True arl8bb
XM_039798613.1 mRNA downstream 128515 6882145 ~ 6941612 (+) False sema3fb
XM_039798612.1 mRNA downstream 128516 6882146 ~ 6941612 (+) True sema3fb
TU48651 other upstream 9928 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 595546 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 723915 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1714151 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 488579 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1474132 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1863368 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1888400 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1957379 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile