RNA id: XM_039796702.1


Basic Information

Item Value
RNA id XM_039796702.1
length 798
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120556884
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41362503 ~ 41365014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGACCTGTAGCTGATTGTTTACTGTATATGGAGATGATATTCAGCTGTTTCCTTCAGACACAACCTCTCTCTGTCGGAGGATAGAAAACAGCAGATGATTACATTTCTAATTCTTCAGATTTGCATCGTGTCAGAGTTCTGCTCTTCTCCTTCAGACTTTGCGCAGTTTAGCttttacatttctacatttaatCCTTTTTACTGAATGAGACTGAAGGAAAGAAGTTCTTCTGTTTTTGGATCTTTGCACCTGAAGCTTTTCTGCAGCAACTCTTCGACAACCATGAAGATCTCCATCATTGCCGGTGTGCTGCTGCTTTCTGCTGCCGTGATCTCTCTGGATTTTGTGAGAGAAGAAAAAACTCTGGCTGCAAAGTTTATAAATCAGCATATCAACGAGGAGATGAACAGTAACAACTGCACCAAGGTGATTAATGACAGAGGAATCACGGACTACAACGGCAACTGTAAGCCGATGAATACCTTCATCGGGGCGCCTATCGGAACCGTCAGAGGCATCTGTGGGACTGGAGgacagaaatactttaataaaaagaaacctGGCATTCGCAATCTCAGAAAAAGCCGAGCACCCTTTAACATTGTTGTCTGCAGACTGAAGGATGCTACTGTCGCTCCTTGTGAGTACGAAGGTGCAGCTTATAACAGGCACATTGTAGTCGCATGCGATGTTAAAGGAGATCCTGTTCACTTTGATAGGTTTCTGTCTTATTAACCAGCTGATGAATCAGTGGACCTTGGGTCTCTTGTTGAATAAAACCCAGCTGACAGTTTA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0004540 ribonuclease activity molecular_function

KEGG:

id description
K01168 RNASE1_2; pancreatic ribonuclease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59913 lncRNA upstream 56383 41305908 ~ 41306120 (+) True G44758
TU59911 lncRNA upstream 56722 41304778 ~ 41305781 (+) False G44757
TU59912 lncRNA upstream 56722 41304778 ~ 41305781 (+) True G44757
TU59904 lncRNA upstream 285371 41045844 ~ 41077132 (+) False G44751
TU60340 lncRNA downstream 16208 41381222 ~ 41387063 (+) True G45095
TU60379 lncRNA downstream 122318 41487332 ~ 41493634 (+) False G45119
TU60381 lncRNA downstream 126658 41491672 ~ 41501091 (+) True G45119
TU60444 lncRNA downstream 337620 41702634 ~ 41703077 (+) True G45174
TU60456 lncRNA downstream 393689 41758703 ~ 41763651 (+) False LOC120557139
XM_039797163.1 mRNA upstream 2149 41358141 ~ 41360354 (+) True LOC120557130
XM_039797514.1 mRNA upstream 372583 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA upstream 372584 40969220 ~ 40989919 (+) False LOC120557311
XM_039797515.1 mRNA upstream 431120 40922588 ~ 40931383 (+) True LOC120557312
XM_039797516.1 mRNA upstream 431120 40922588 ~ 40931383 (+) False LOC120557312
XM_039797165.1 mRNA downstream 41529 41406543 ~ 41412621 (+) True LOC120557132
XM_039796466.1 mRNA downstream 260193 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA downstream 260812 41625826 ~ 41628189 (+) True LOC120556749
XM_039797171.1 mRNA downstream 374311 41739325 ~ 41743157 (+) True LOC120557138
XM_039797172.1 mRNA downstream 386036 41751050 ~ 41768313 (+) True LOC120557139
XR_005638994.1 other upstream 694997 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 821272 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 855933 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 856447 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 1198893 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 385989 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 504716 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 532008 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 540515 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 540593 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile