RNA id: XM_039796703.1


Basic Information

Item Value
RNA id XM_039796703.1
length 888
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120556890
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44841316 ~ 44842831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcattattttttaaaaaggttttcaacGCGTTTGGTGTGAAGAGCATGCGATACCAAGCTTTCCGGAAACATGCCAAAACCTATCTTGAACCTGCCATTGTTTGGAAATGGAAAAGGGCCCAGCAGGTTGAGCTTCAACGTTTAAGCCAGCAGAGCAAGGTCATCATTGGAGGAGATATGCGGGCAGATTCTCCAGGCCATTGTGCCAAATTTGGAAGATATACCGTGATGAATCTTGAAACCAGCACAGTCATCGATATCCAACTTGTGCAGAGCAATGAGGTCGGAGGGAGTTACTACATGGAGAAGGAAGGTCTGAAGCGAAGCCTTGCTCTTCTGGAGGCAAGTGGTGTCACATTGGACTGCATAGTCACAGACCGCCACCTCCAGATTAAAAAATACCTGAGAGAAAAGGGCATCACACAGTACTTTGACGTCTGGCATATTGATAAGGGGATGTCTAAGAACATCGACAAACTTGCCAAGGAAAAGGATTGTGAGGTGGTAAAAAAGTGGCAACAGAGTATTAGGAACCATCTCTACTGGACTGCATCATCATCCAAGACAGGCCCAGAGAAGGTGGCAAAGTGGACATCTGTCATCAATCACAtccacaacatacacacacatgaagaCCCCCTTTTTCCAAAGTGTGAGCACAGTGATGTCATAGATAAGAGGAGGTGGTTGAAGCCAGGATCAAAGGCTTCCTACAGACTGGAGAAGGTCCTTACAAACAAGAGGTTCATCAAGGGTGTGGAGAAGCTAAGCCCTCACCACCAAACATCCTCTCTTGAGGCCTTCCACAGCGTTGTCATCCGCTTTGCACCAAAGAGTGTGGTGTACCCATTCATTGGGATGCTTTGCAGGTAATGCACATTATGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638908.1 lncRNA upstream 84 44840062 ~ 44841232 (+) True LOC120556889
TU61415 lncRNA upstream 16532 44823528 ~ 44824784 (+) True G45873
TU61402 lncRNA upstream 33913 44806710 ~ 44807403 (+) True G45863
TU61348 lncRNA upstream 96526 44742275 ~ 44744790 (+) False LOC120557302
TU61362 lncRNA upstream 126626 44714173 ~ 44714690 (+) True G45831
XM_039796848.1 mRNA upstream 37963 44771904 ~ 44803353 (+) True LOC120556948
XM_039796849.1 mRNA upstream 37963 44772099 ~ 44803353 (+) False LOC120556948
XM_039797491.1 mRNA upstream 96526 44712415 ~ 44744790 (+) False LOC120557302
XM_039798366.1 mRNA upstream 132590 44670589 ~ 44708726 (+) False ralgapb
TU61350 other upstream 99121 44724807 ~ 44742195 (+) True LOC120557302
TU61241 other upstream 342020 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 346597 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 433867 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 479948 44360786 ~ 44361368 (+) False G45635

Expression Profile