RNA id: XM_039796727.1


Basic Information

Item Value
RNA id XM_039796727.1
length 4108
RNA type mRNA
GC content 0.50
exon number 20
gene id arhgap9
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22507327 ~ 22554602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGCGCACCACAGACCCCTCTGTGATCTTATTGGTTATGTGTAAAATCATATCGCGCGCTTGTAGCCAATCTTAAACCACCATACCCACACAGCGAAAGCTATTTTTTATCCGCTTAAAGCGTCAGGAGGATGTTCCATCATGGGCTGCACCGGACAACTTATTGACAATGACTGTAATTTGCTAAAGTGCACGGCGGAGTGTTTCTCTGTGCTTCCGTTTACCAAAATAATGTAAAGttatcaatgtttttattccttCCACGAGAAAAGTCGCAACTCTTGCTGTCactcaaaaaactaaattgaGCTGTCAACACGTCGCTGCAAGaGCATGGCTCTGGCCTGGCTCCAGTCTCACCTGCCCTGTGCTAACCCAACCAGTATCACCAGCAGCAACCATCAGCACACTTCCAGAAAAGCTTGCTAAACAGGACTGTGTGGAAAACCATGCTGTCTGGGACTTGGCTGCGTTCTGTGGGGCACCAGCAGCCTGCTGCAGCGCCTGTTGTGACCCCAAGAAGCATGACAGTGTGTGGGGTCCCAAGCGGCACAGTGGTCCTCGAGGCCCAGTATGACTACAACTACCGTGGTGCGGATGGACGGCAGGTCTGCATCAGGGAGGGTGAACGGTTTATTCTCCTGAAAAAGACCAACACTGACTGGTGGCAGGTGCGGAGGATTGGGGCTGCCAGTAAAACAAAGCCACTGTATGTTCCTGCGACGTATGTGACAGAGGTGCCCATTGCACCAATGCCCTCGCCACAGCGCCTGGTTGGGTCTGCCTCGCTGAACTCCAACCGCAGGATACTGCCAAGGGTGTCACTCTCTCCCAACCCAAAAGAGACAACCTATAGTGAACAGCGTCAAGTGAACAAACTCATGTTCCGCTCCATGGAAAACCTCAACTCCAACAGTGCCTTTCAGGGGCTGGACAACAAAACCGGTACAGGTGGAGGCCGCTTCCCCACCCTGCCCCTCTGGTCTGGTTTCACCTTTACCCCCAACTCTCCCACATCCCCGTCAGGACACCTCATGGTCCCTGCGTCCCCCACAGCTTCCACGGCACCACCCAACCCCAGGGTGGTCCCCATGATCACTCGGAGCCAGAGCTCCAGCAACCTACCTGAAAACCTGATGGAGAACCCGTATGATGAGGTGGGCGGCGGCTTCAGCAGCCGTGTTAACCACAGGATGCCCAAGAAGTCTTGTAGCCAGTGGGACATGGTGGGAGCCTCCTGCAAGAAGAACCACCTGCAGGTCCCAGCAGAGTCCTATATGTTCCAGCTGTCCTGGAAGGACTCCCCTCTATACACTGAAGTGCAGCCAGAGAAACACCTGTCGCTCACAGAGCCCCCTAACCCTGCCCCAGGTCAGCAGCCTCTTCGGGTCATGGACCTGTGGGAGCAGTACTCTGATCTGCCCACAGGGAGATACTACTACGTCAACAGCATCACCAAGGAGAGGTCCTGGAAACCCCCTCGCCGGGCCCGTGGACACACACCCAACAAGGCCGGTCCATTACAACCTCAGACGTTACCCAGAGAAACCAGCCATCTGTCACTACCACTTCCTGAAGCTGGCAATGGAACAATGCACAGGTTGACACCTGATTTCCTCTTCGAGAGCCACCAGAGGAGAACTGACGGTGGCTGGCAGATGAAACAGAGCATGCAGCGCGCCGTCTCCTCTGACACCCTGAGCACGATGTCGTTCAGCAGTGCCGATGCCCAGTGCCATAACTCTGCCGCTCTGCATGATGTCAAGCAGCAGCTCAGTCACTCCCAGTCTATGATCCTACCTGAGAACGGCAAGGTGGTCCAGCAGTGCAGAGATTACTCCTGTAATGTGACCAACATTGTCGTGGAGCCTCCGTCTCCTGAGAGCTCTCCAGACAGCGATGGCTGCACACCGGAGTTGGAGAAAGCCGGCCTCCTGAACAAGACGAAGATCGCAGAAGGAGGCCGGAAACTGAGGAAGAACTGGAGTCCTTGCTGGGTGGTGCTGGTCGGGAACAGTCTGGTTTTCTTTAAAGATCCTAAATCACAGACACCTTCCAGCTGGAAACCAGGAAACAGTCGTCCTGAGAGCAGTGTGGATTTAAGAGGAGCCCAGCTGCACTGGGCCAACAACCTGTCCAGCAAGAAAAATGTCTTCAAGCTGAGGACAGTGACGGGCAACGAGTTTCTGCTGCAGTCGGAGACAGACTCTCTGATTAAAGAGTGGTACAACACCATCCAGAACGTCATCGACAGGCTGGACCGCGAAAACCCGTTAGACAACGTCCTGCAGTACTCTCTGAGGCGAGCGGGCAGCGTGGAGATGCTGGAACACAGCGGGGATGAGGATGACAGGAGAATGTCGCTCCCTCGCTCGTCATCCAACCTGGAgaacacagagaggaagagagtgaAGACCCGGCTGAAGAAGCTGATCCTAAAGAGACCTCCTCTGCAGGCGCTGCAGGAGAAAGGGCTCATTAAAGATCAGGTGTTTGGCTGTCGTCTGGAGATGCTCTgcgagagagagaagagcacCGTCCCTCGCTTCGTCAGACTTTGTACTAACGCCGTGGAGAAGAGAGGACTGGACACTGATGGCATCTACAGAGTGTCAGGGAACCTGGCTGTGATTCAGAAACTACGCTTCCTGGTGGACCACGAGGAGAAGCTGAATTTGGACGAGAGTGATTGGGAGGACGTTCATGTCATCACAGGAGCTTTGAAACTTTTCTTTCGCGAGCTTCCTGAGCCCCTGGTGCCCTTCGGCTTCTTCACCGACATCGTGGAGACAGTTAAGATGTCGGACTACATGGACAAAGTGGACCGTTTGAAGTGTCTGGTGCTTAACATGCCTCCTCCAAACCATGACACGCTGCAGTTCATGTGTCGCCATCTCAAACGAGTGTTGGAGCATTCAGGCAACAACCGAATGACCACCCAGAACATCGGCATTGTGTTCGGTCCGACCCTGATGCGTCCAGAGCGGGACAACGGCAACATGGCGGTGAATATGGTTTACCAGAACCAGGCGGTGGAACTCATCCTCAGCGAGTTTGACCACATCTTTGGAACAAGAGGGCCCTCTTGATCTTTAtggacagaggaggaagagggtggGGGGATTCAAAAAGCTCCTCCAGATCAGACGAAAGCACGAGTAGTGCAGCGTTTGTCCTCTTTGCCTGTTGACTCATGTGGTGTAAAATGGGTTTCACATCAAAAGATAATTATGGGGTAAAAAGAACCAGGACAGAAAGCTGCTAATCATGACATCTGGCCTCCATATAAAGCCATGTTAAAACAATAATAGTAAAACAAACCAATTTTAGCTGCACTACTTGTGTCTTTGACTGCAGATGTGGATTGCAGCCTCTGTGTTCTTTACTGCTGGAGTGGACGCCCCCTTTGTCACATTTCCTTGATGTTTCAGATTTCAGATCAGGATATACAAAAGCCATAAACGTGATAAATCTCCTCCAGCTAGCTGAGTATTAATCAGTTATTTATCAAGGAATGTGAGGAAGGATGTGTCTTAACGTAGCACTCAAACAAAACTTAGCAGAGCCATCTCACTGTGAAAACTCATGCGCCAGCACCTTTTGCGGCAAAGATGGACATATCCCACCTGCAGTGGAAAGCAGAAGATATACAGTAAAATATGCAAACAAGCAGGAAGCAGGCTGGGCATGTAAATGTGACCGCATCCCTGCTGAAGTTATACAGTGTTTTAATGACGATGTAAAGTTCAACGGGGGAACTCTTCAAAGATAAAAGCACGGTTTTAGTGATGGGATGATGTGCCAACAGGGCAGCTAATGTTCCTCTGTACtttgtagtgtgtttgtgtggaccTTTTGGACAAATTTGGAACTGTCTTCTATTTTTATTAGTGCAAACTCCTCAGattaagtaaaaataaatatatatatgaagttgtaaatatgtgaaatattgtTAGCACTTTGCATACAGTGTGTAActtaaacaatatatatattagcCAAATGAAATCAGACTGATATATTTGCTTTTAAATGAACAGTATGTTGTTAAAATATTGCTTGGACCTGATTGGTAACTCtcctgcaataaaaaaaaaaaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55086 lncRNA upstream 82212 22389178 ~ 22425121 (+) True G40948
XR_005638962.1 lncRNA upstream 209521 22294954 ~ 22297812 (+) True LOC120557379
TU55057 lncRNA upstream 233032 22274074 ~ 22274301 (+) True G40923
TU55035 lncRNA upstream 304597 22202126 ~ 22202736 (+) True G40904
TU54965 lncRNA upstream 589522 21917243 ~ 21917811 (+) True G40842
TU55200 lncRNA downstream 15 22554617 ~ 22554845 (+) True G41021
TU55222 lncRNA downstream 37070 22591672 ~ 22593083 (+) True G41040
TU55223 lncRNA downstream 40825 22595427 ~ 22596515 (+) True G41041
XR_005638895.1 lncRNA downstream 221639 22776241 ~ 22824156 (+) True LOC120556826
XR_005638894.1 lncRNA downstream 222209 22776811 ~ 22824156 (+) False LOC120556826
XM_039796728.1 mRNA upstream 19765 22483196 ~ 22487568 (+) True ddit3
XM_039798179.1 mRNA upstream 30068 22461491 ~ 22477265 (+) True dctn2
XM_039798180.1 mRNA upstream 30068 22461492 ~ 22477265 (+) False dctn2
XM_039797084.1 mRNA upstream 136400 22355111 ~ 22370933 (+) False igsf8
XM_039797406.1 mRNA downstream 121920 22676522 ~ 22753513 (+) True LOC120557262
XM_039797415.1 mRNA downstream 121920 22676522 ~ 22753513 (+) False LOC120557262
XM_039797411.1 mRNA downstream 121920 22676522 ~ 22753513 (+) False LOC120557262
XM_039797412.1 mRNA downstream 121920 22676522 ~ 22753513 (+) False LOC120557262
XM_039797418.1 mRNA downstream 121920 22676522 ~ 22753513 (+) False LOC120557262
XR_005638988.1 other upstream 515534 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 2358643 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2583784 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2647992 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 2875327 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 1194308 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1203156 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 3714000 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 3987905 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 3987905 26542507 ~ 26548799 (+) False G41850

Expression Profile