RNA id: TCONS_00075276


Basic Information

Item Value
RNA id TCONS_00075276
length 1343
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_037564
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1931428 ~ 1936169 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACCTTATAAGTGGTAATGAATAGCCTAAAGCGTCACTGCCTTTGTAAGCACTGGCAAGCCGTCTCTAACAGAATAGGCTCTTTCCCGGCTTCCCCCTAGCGAGGCATTTCAAAGCTCATTAATCAAAAACTCGTCGCTTTCAGTCTCGCTACTGATTCCAGCTCCTTATGAACAAAGCTTTTTGCTTTCTCAACTGTGGAAACACATTTCAAACTGCAAGAGGCCAAACTTtgtcctgagagagagagagactgtgacAACACACTCTGCAATCATGGCATGGATGAGAGAGAACTCAAAACTGCAAAGACACACTGCCAAAAAGCTGCAGAGGGTTCAATCACTAAGGGTGGGAACTTTATGACTTTCACGGCCAACTACTGTCAGGATCAGAGGGAAACTGCGGCCCCGTCTTAGCCCGGAGGCGCCCGGGAGAGACTGACGAGAAGCATTTTGGATCATCATGTCAACACCCGATTAACCTCGGACATGCTTCAAGGCGGCAGAGATGCTGATTGACCAGTACTGAGACACACAAAGTTTTCAGCAAACAACGCTCTGAACTGGAGGAGTTTCAAGTCAACAAGTACCTGGGCAATTATCAAGGATTGTAATATATGGCGTTGTGATCCTGAATGAGATCCTGCCTCCAGAATATGTGAATGAAGACCTGGCACTGAGTTTCACCAACTCCCCCATTTGCTTTGTAACCACACATTGCTCTCACTGTCCAAATTAAAGTGCCAGGAGCTAAATTAAAAGAGCAGTTCATTCAAATGTTACTATGGTGTGGGTTTTTATCATGGAAACACGTTTATTTATTCGTGTTATTAAGTGATCATTGAAGTATTTTCAGCTTTTGATTAATTTATATATTGCTTTAATACTTCTAAAGTGGTTTTAAATTGATGGATATTTATGTTGAGTAGTCTATAACTAAAGTGAATATAGAAAAATCCACACACTGACATCTGAGTTTATTATTGCTGCCTTAAGTTACCCAACCCAAGTCAATCATTGTGCACTTTGTGTTAACATTATAAAAATAGTATTCAActgttattataaataataatttaacaccTGAACCGACTGCAGAATGTAAGCATCTCTCTATGTGTGTCAGTTCATTATGCAGCCTCTTTTCCAGAGTGCCCAAATCAACTGTTTAGTCTTCAAGGCGGTGATGTGATTAGCAGTAATTCTCTCAGAGCAAATGTGGTGACATGTATTGAGGACTGCAACACTGTATTCCAGGCATCGGATGGAGAGATTAAACCTGACAGAATTAAAATTGTGATAACAAATGGCAGGCTTGACATTTCTTTCAATAAAATATT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075261 lncRNA downstream 151047 1463769 ~ 1780381 (-) False XLOC_037558
TCONS_00075277 lncRNA upstream 214753 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00075278 lncRNA upstream 214753 2150922 ~ 2173197 (-) True XLOC_037572
TCONS_00074958 lncRNA upstream 244350 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075279 lncRNA upstream 299724 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074959 lncRNA upstream 446172 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00073789 mRNA downstream 227627 1692926 ~ 1703801 (-) False XLOC_037562
TCONS_00073790 mRNA downstream 227627 1693369 ~ 1703801 (-) False XLOC_037562
TCONS_00073792 mRNA downstream 227667 1695321 ~ 1703761 (-) True XLOC_037562
TCONS_00073791 mRNA downstream 228780 1693535 ~ 1702648 (-) False XLOC_037562
TCONS_00073786 mRNA downstream 291463 1629307 ~ 1639965 (-) True XLOC_037560
TCONS_00073795 mRNA upstream 880 1937049 ~ 1939232 (-) False XLOC_037565
TCONS_00073796 mRNA upstream 883 1937052 ~ 1959917 (-) False XLOC_037565
TCONS_00073797 mRNA upstream 1517 1937686 ~ 1949915 (-) False XLOC_037565
TCONS_00073799 mRNA upstream 12296 1948465 ~ 1951144 (-) True XLOC_037565
TCONS_00073802 mRNA upstream 27836 1964005 ~ 1965727 (-) True XLOC_037567
TCONS_00073793 other downstream 182392 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073788 other downstream 286667 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073777 other downstream 551938 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073774 other downstream 927873 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073798 other upstream 2816 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073800 other upstream 16787 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073801 other upstream 16852 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073808 other upstream 290294 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073809 other upstream 394692 2330861 ~ 2337303 (-) True XLOC_037575

Expression Profile

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