RNA id: TCONS_00007174


Basic Information

Item Value
RNA id TCONS_00007174
length 6340
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_003704
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42641404 ~ 42722658 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATACTTCAGATTCAAAAACACGAATAGCATTTCGCTGTTGTACACATTCACGGGGACGCGCGCTCGTTCACTGAGCTCCACCTTGCGTCTCGTGCACGCTCACAGACTCGCGAGCGTTCATTCACTTCAGAGGAGCTTCATGGACGGACAGGAATGGCTGGGTCACGGAGACTTGCGCATTTTTTCATGGCTTCATGCTTATTTCTGTGCTACACCGCTTCGGTGAACGGAGGAAAGAGAGGAAACTCGGATAAATGCAGCTATAAGCAGGGAACACAGACGTCCAGCATGGATGAGGGCGCTCGCAAACTCGGAGTCACATTTCGATATGACAACTGCTCTGTGAACTGGAGTCCGCTGGGGAAACACGCCATCCATGAAGTGAACAACATCAGCTTCAGTCATCTGTCCTGTGACAGCCAAGCAGCCGTGGTGGTCCATTGGATGGCCAGTCCTCTCGGTATTGAACATGTGAAGGGATTCAGAGTGTATCTGGAGGACAAAAACCCAGAGCGGAAACAGTGCCAACACTTGATCCTGAAGGATCCGCGACAGCTCAACTTCTCTTACAAAACCATCAGGATGAGCTCACAGCCCTTCTCAAGTCTCGCCTTCGAGACCGATTACATGGTCAGAATTGTGCCGTTTCCAACTTTCTTGAACGACAGCTTCTTTCCGCCATCTTTTCTGCGCACTAACAGTTGTGAAGTCCTTCTTGGCCCAGATAACCTCGTCTGCAAACCATTCTGGAAGCCCAAGATGCTGAACGTTTCTCAGCTGGGATCTAATTTGCATGTTGTGTTTGACCACGCCCCCTCCACCTTCGGCTTCTCCATTTACTACCTGTACTACAAACTCAGACAGGAAGGACCGTTCAGACTCAAGCGCTGCAAACCTGAGCAAAATGGCCCCAAAACTACTTGTGTTTTACAAGATGTCACTCCAGGAACGTACGCAATAGAGCTTCGTGATGACAGCAACAACACCAGAAGACAGACACAGTATCACGTCAGCCAAGTTCACTCCCCGTGGGCCGGGCCGATCCGTGCCATGGCCATCACCGTCCCGCTGGTCATCATGTCAGCCTTCGCCACACTCTTCACCGTCATGTGCCGCAAGAAACAGCAAGAAAACATCTACTCTCACCTGGACGAGGAGAGCTCGGAGTCTTCATCGCAGACCACGGCTCTGAGCGCAGACAGACCCTGGCCCAGACCCAAAATCTTCATCTGTTACTCCAGCAGAGACGGAGCCAAACACCTCGCCGTCATCCAGAGCTTCGCCTTCTTCCTGCAGGACTTCTGCGGCTGCGAGgtTTCTCTGGACCTCTGGGAGCACCTGGAGATCTGTAAGGAGGGTCAGATGTCCTGGTTGAGCCGGCGCATCGACGAAGCCCACTTCATCATCACCGTCTGCTCCAAAGGCCTGAAGCACTTCGTGGAGAAACGCCACCGCAAAGGCAAAGCCACATCCAAAGAGAAAAACCGAGAGCCAAGCGCTAGCGACTCCAGCAGCAGAGATCTGTTCATCGTGGCCTCCGCCATCATCTCAGAGAAACTCAAAGAAGTGCACCAGAAATCCTCCGACCTGTCGCGCTTCATGTCTGTGTATTTCGATTATTCCCATGAAACCGATGTCCCGACTTCACTCAGCCTGGCGCCGAAGTTTAAGCTGATGGATCAGCTGCCGCAACTCTTCGCCCGATTGCATTCGCGCCAACTGAGTTTGACCGATCGTGAACCACAGCCGCCGAATGTTAGCAAACGCAACTACTTCTGCAGCAAATCGGGACGCTCGTTATATGTTGCAATTTATAACATGCATCAGCACGTCACGCAGGAGCCTGATTGGCTGGAGAAGGAACTCATGCCTCCGCCGCTACCTAATAAACGCACCATTCCTGAAAAAGTAGATTCAGGATTGGTGCTAAATGAAGTCAAACTCAAGCATGGGTCAGAAAGCGAGTGTCCTCCAGTGAGGAGTAACGTTTTGATTTTGCCGCAGACGCCTCAGGTGGGATTGTCTTTGAGTTTGTCGAGAGAGGATCTCGGGGAGGGATCGTCCAGTCAGGACGCGGGTTCATGCCGGCCGGTTCTTCACACTGACGGATCCGCCAGTCCGCCGGAGATGCCCAGAGATTCGGGGATTTACGATTCATCTGTGCCGTCGTCAGAGCTCTCCATCCCGCTGATGGACGGACTCTCACCGGATCACGCAGATAACTCGTCTTTGGCTGACAGCGTGTCCTCCTCTTCAGGACTGGGTGACGAGGAGCCTCCAGCCGTCAGCTCACTGCACTGCACAGCACACACAATATGCAAAGCAGATCTCCATCATCAGCACCTCCACCCGAGTGAAGGACTCATAGCTGCAGCCTCCACCTGATGCCTTCAGCTCCACTCGCAGCGCCACTTTAACCCTTTTCCTGCCACTGACTCATGCGTCAATGAATCTCTTCATCCGGAGACACATCTGACGGAGTAATCTAAAGGGATCTGGCAACGCTGTGTCTGAAAAACTGAACCAAAGTGCTATGGATATGCTATCGTCATTCAGACCTTCTTGCCTTAAAATGGGTTTGAACCTGTGGACGGACCTGAATGTGAGAGTCCTTTAACATGtaatttcagctttatttattgtattaactGGCTTCAGATGTGCGGGATAACCTGTTGTGCTCACTGCAGATGTGTAGATTGGGACTTTTTACATAGCAACACTCAGTTTTAGAGGCGTTTCAGGAGCTTTTaggtctttatttttgtttatggatCTTTAAAAACGTTTCGGGAATGTTCACCGCATAGCATAAACAGATTAGCATAGGTCTAATGTTTGCTTTATGACAAAGGGAAGAATGAGATGCTATTTTGTTaactttataaatgtaaatgtttcatcTGTGTACGGTTTTATCcaggttttgtacagttttttagTATATTAGGAGTGATTTCTACATTATATAAGCTTTGTACTGTTTTATAGTACTCTAATGTAGGAGGTACACAATAAAACTAAGATTTATATGcattgttgttattgttcatgCTTCTTAAAGTATAAATACTTGAATaacttaaccagttaaactctgcggtaccgggtccgtgacatcatcaactttcgctttaagatttaaagggctagaattgcaccagacccccgtaagtggtttcgtttgaaagtgtagaatctatattttatgcacatatgcatcactttggtttttattctactgtacaaaagttatttacacttaaataaacagtattttggatacccgagctgggtattgaacattggttcattttcatatttttcatatgacacatgtacaagttatagctcaaatgaaagctctttgcgatgctcatacggttctagcattcttttactgaattatattcacatatcaaacagttgctgaatgaatcacGGTGTTTCCTTGGCGCAGAAgcgaaaaaaatgcatttatgatcaataagcagccccagatagcacagacagctgtcatctctcaccttatgcagtgcacttcagggccattctcctctgtttgtgaggtgatgtgcataagtaatccttttatatgtctgatgtggtccaaacacagtgaattatgtttgatcaaacaaaagaatagtgaaatatgaaaacaatgatcgctccctgtggcttgtacagcacctctcatcagttggaatacaataacttttgcatagattatggtggagacatttttcttttctcctaagattacagacatgtgcaggaaccaccaacattaattacagcacgctagaccacacagaacctaaaaggtacactttcaaatttgagtttataaaaaaaaaatacaaaaagcgcctctttttttaggtgtttattttaacacagacgacatatacagatattttaaacactttcaatagtgttttatgaaaattcaaagggttttctttcaaataaaaccaaatttttgcatttacacctctgcatgtggatttgggacgcttttaaatttgggtaggcaaaatccaggcggaaatcccaaaatagcagcagagtttaactggttaaacttGAAATATGCTAATTacgttaaattacaaatatttgttaaaatcTCCAAAGGTCTTGTTAAAAATGCAGTAGGTAAACTGCCAAAATGCATAATAGCATAATATCAAACACAGTCCCTTTCTTGCTACTCAAAAGCTACACCTTCTGAAATCACGAACGTGCACCGTAAAGATtacagtagacaacccactagatcagtggttctcaaagtagggGTCAGGACCCCTGGGTGGTCGTGAGATATTTGGGGTGGGATGTGGGGGGGagtcgcttggtgatttctaaAAATCTTAGTATTTTATATAgactcgacacagaggagcataacctcactgccagctaacatttcagaagtgttattgcagagcaacacaaacagcacgcagaagtgtaaatgcatgGCTATAAGCAAAGAACATGCCGTGggtcactcaacgcagaagtataagtcAGCCTTACCTCTCTGAAACTGACTCTTTTAggctgtcactttaaattcaaatgagattgtgctctttccagaagagggcggagctataaacGCCTATGTGTCAGTatagtggcagattaaaaaaCAAGACTATCATCTTATGCTTATGAGGGAGAGATGGCctctagtgggcggggcttttcccctctgatgacacgaaCAAAGGgaggatgtcaatcaaagtgtttctgcagactgtttacatcaagtctgattataaaacatacactttatacatttttactattagaaacCGATATATTCatacaatataattataatacaaatGATATAATTGTATATTCATACaatttaaaagtgtttataagtgatttttgcataatagttcccctttaagtaactaatatatttatttcCTGCATTATTCATCCCTGACCTGTTGTTTATTGAGCTCGAACCACACAGCTCTGTAATCTGGTGAATTCTGGAACCCTAGAGATGTGAAAAGCTTGTAGGAAGGCTTGTTTTCTTCTTCCACAAAACAGTAGACCGGGTGTCCTTGTTCCAGGAGGTTCTTGGACATGATGGACACCAGCAGCCTGGCGTAGCCTTTACATCGGTGTTGTGGTAATGTGTAGAGCAAACCGAGAGCAGCATGAGGATACACGAGCAGCCAGGAGACGGGCTCCGTCTGGCCCTCCTCGATCACACACAGTGAAGGattatgggaaatgtagttcagCACCGAGTTGTAGCTGCTGCTGTCTCCGCCGTACTTCCATGTGCTGTTCACCAGATGTGCATGAGCCGTGCTGAGAGGAGCAAAACTGAGGCCAGCATGTCTGAAAAGACATGAGAAAACTGGCTTCTTTACGTTtgaaataaagggatagttcactcaaaatgtatgcatttatttaatctacTCACTGTCAGGGCTTCAAGATGCATAGGTGACTTTTTTCCTCAGTATAACATTGAAGAAgatttttaactgtttttttttttgttttgttcagaaaATGCaacgtaatgtaatgtgtgtatttatatagcacatttttatgtatggctatacacccaaagcacttcacaatcatgaggggggggtctctccacaccaccaccagtgtgcagcatccacttggatgatgcgacggcagccacagcacaacggtgccagtgcactcaccacacaccagctataggtggagtggagagacagtgacagagccaattcagtggatggggatgattgggaggccatgataggTAAGTGCTgatgaagggaatttggccaggacactggggatACTACCCTAtcctttacgagaagtgccatggcttttaatgaccacagcgagtcaggacctcggcttaaagggccatgaaaccccctcattttAGCAgaatgttttcacacctctactttggaaaaagtcagcaaagtgggcgtgtccagctctgtttaggggggagtgtcggaggaactaatgtgggagggtgtgggagtgtgtATTTGGGCACgagcgagtttcagagtcaaaatacacacacatgagaaagtgatggtgtttaacctacatggacatctgtagtcgaattatttgccaaattattaaatggtggactttaactgcagtttggctctttcattcacgaattcattcatgcccctcgcgacaaacgagatatttgattcgaggaactgctctaagcgtgtatttttcatgcaatgtttgataccgcacggcaaatgagagaaaaaaacctcagcatttcccggaaacttagatgca

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030368 interleukin-17 receptor activity molecular_function

KEGG:

id description
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-020320-5 Predicted to enable interleukin-17 receptor activity. Acts upstream of or within dorsal/ventral pattern formation and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural keel; and neural rod. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 18 with or without anosmia. Orthologous to human IL17RD (interleukin 17 receptor D).

Ensembl:

ensembl_id ENSDART00000172641

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007166 lncRNA upstream 68422 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 223030 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 509497 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 543113 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008426 lncRNA upstream 571740 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008429 lncRNA downstream 70920 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00008687 lncRNA downstream 117192 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 117196 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008689 lncRNA downstream 117198 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008690 lncRNA downstream 117208 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00007170 mRNA upstream 5964 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007169 mRNA upstream 5964 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007173 mRNA upstream 6684 42633376 ~ 42634720 (+) True XLOC_003702
TCONS_00007171 mRNA upstream 13557 42600859 ~ 42627847 (+) False XLOC_003702
TCONS_00007168 mRNA upstream 42386 42587900 ~ 42599018 (+) True XLOC_003701
TCONS_00007176 mRNA downstream 4054 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007177 mRNA downstream 7981 42730639 ~ 42732440 (+) True XLOC_003706
TCONS_00007178 mRNA downstream 43305 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007179 mRNA downstream 43439 42766097 ~ 42819730 (+) False XLOC_003705
TCONS_00007181 mRNA downstream 320513 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007172 other upstream 15917 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1176168 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1483476 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1483478 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1752110 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007182 other downstream 322168 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1302104 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1602103 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1602103 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1606116 44328774 ~ 44335322 (+) True XLOC_003732

Expression Profile

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