RNA id: XM_039796782.1


Basic Information

Item Value
RNA id XM_039796782.1
length 2681
RNA type mRNA
GC content 0.52
exon number 30
gene id cast
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10294535 ~ 10333383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCCGTGGAGGAGCagTCGCAGCCTGGCCAGGCCACACCTAAACTGGCAGCCCAGGTCTCCACTGTGAAGCCTGCACAGTTTGAGAAGGCATCGTCGGATCCACCATGGCTACAAAGCCTGGGCTGGTTACCACAGCAACAGGCGGAGCCACACAGAGTGGTGTCACAACAGGAGGAAGTGCTTCAATTGGGACAGCAGGAATGGCCAAGCCAGAGGTGCAGGTAGAGGTTCCTCCCGCAGCAGCTAAAGGAGCCAAAGAGCCTCCAGTTCCTGCAAATGTTAAACCCAAGGATGTCCCTaaACCAATGAGCACAGACGATGCCCTGGATTCTCTTTCAGATGGATTCATGGCTTCAACCGTTCCAGCTGCACCCAAAAAGCAAGAGaaaaagGACTATGTTGAGAGTGTCAGTGCCTCATCTGCTGGCCCTGCTAACTTTGCACCACCTCCTGTAAAGAAATCTGAAATCCCTGCTGCCGTTCCCCCTGTGGCTGTGTGTCCTGCTCCTCCAGCTGATAAAAAAGCCAAGATAGAGAAGGCTACGGGTGATTTCTCTCTGGAGGCTGGGCTTCCCTCTGCTACTGCCAAGAAAAGTGTACCTCCTGTGGCTGTTTGTCCTGCTCCTCCTGCTGATAAAAAAGCCAAGACGGAtggctctctgtctctggaTCCTTTCAGCGCTCTCAGTGACACATTGCCAGCAGACCAACCAAAACCTGAACTCCCAAAACTCAGACCTCAGGACATCGTCTCGgaGGATAAACTCAAGAAGGAGAAGGGCGTGTTTgtaggagagagggaggactcACTTCCTCCACAATACAGGTTTAATAAGGACAAACACCAAAATCTGCCTGCTCCTACACCTGAGCCCACCATAGATGCTGGTGAGGCTCTGGACTTTTTGTCTGAAGGCTTCACGACCTCCTCAGCAGCGCCTGCTGTCCAGGCGCCTCCTGCAAAGAAAGCAGTTCCTCCTGTGGCTGTGTGTCCTCCTGCTGACAAAAAAGCCAAGATGGAGAAAGTCAAGGATGATTTCTCTCTGGAGGCTGGAATTACTTCTTCTACTGGCAAGAAAGTTGAGTCCTGTGCAGTTCCCCCTGTGGCTGTGTGTcctgctcctcctgctcctgtcacagtaaagaaaactgctgctGGAAAGGACGCCACTGACGGCAAGCTCAAGACTGGTCAGGATGGCTCTATGTCTCTGGATGCTCTCAGCGCTCTTGTTGACACGTTGCCCGTAGACAAACCAAAACCTGAACTCCCCAAACTCAGACCTGAGGACATCGTCTCGGAGGACAAACACAAGAAGGAGAAGGGCGTGTTTgtaggagagagggaggactcGATTAATCCAAAATACAGGTTTAATAAAGATGAACTAAAAAATCTGCCGACTTCTAAACCTGAGCCCACCATGGATACCGGTGAGGCTCTGGACCTTTTGTCTGAAGGCTTCATGACCTCTTCCGCAGCTCCTGCTGTCCATGCTGCTCCAGCAAAGACCAAAGTAGAGGATTTGTCAGCTCTGGATCTACTCTCTGGAGATTTTGTTGCTCCAACTAAAGCTTATGGAGTTCAGGCAGAAGGGGTCAAGACACCACAGGAtggctctctgtctctggaTGCTCTCAGCGCTCTCAGTGACACGTTGCCCGTAGACCAACCAAAACCTGAACTCCCAAAACTCAGACCTGAGGACATCGTCTCGGAGGACAAACTCAAGAAGGAGAAGGGCGTGTTTgtaggagagagggaggactcACTTCCTCCACAGTACAGGTTTAATAAGGATGAACTCAAAAATCTGCCTGCTCCTACACCTGAGCCCACCATGGATACCGGTGAGGCTCTGGACCTTTTGTCTGAAGGCTTCATGACCTCTTCATCAGCTCATGCTGTCCATGCTGCTGGCATCACCCCCTCAGCTCCTCCTGCACAGCCCTCTGCAGACTTTGCTCTGGATGCCTTAGCGGGAGAATTTGTTTCCTCCACTGCCGCTTCGACGGTGAAGTCCACTGCTTGTGTTCCCACAGAAACTGCCAAAGAGCTATCCGGAGGAGCAGGCAGTGCCTTGGATGCTCTGTCAGACACCTTGAAGGATATCGCACCCGCCCCTGAACCTGCCCCACTTCCTGCCAAAGACATTGTCAAGGAGAAAAAGGTTGTCGAAGAGAAGCTGATTAAGATGGGCGAGAGAGACGACTCGCTGCCACCAGAGTATCGACCCACTGAGAAAGATCTTAAGaaaacaacagaagcACAGGCAAAAGCAGCTGCCGCACCCAAGGGGAAGACTATGGATGATAAAACAGCCATGGACCTTCTGTCCAGCGACTTCTCTAGTGCTCCCAGGACCATTGACCCAGTCACATCACCTGCTGGCACCATAAAGCTGGATCCTCCTGTCCTGGACTCAGGGCCCTTGAAGCCAATGGCTGGTACTGTCCTGGAGTCCCTGTCTGACACCCTGCTCCCAGACGCCCCAGAGTTCAAACCTAAGACGGACAAACCAAAGGGCAAGagcaagtcaaagtcaaagtctAAAAAACACCAAGCAGAGGAGCCATCTGCCGCTGACCAGCTATCAGATCAGCTTAGCTCAGACGTTGTGCCAACATCTACAAAGAAGGGAGGCAAGAGCTAGACCACTTGGTTGTCAGTAgaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49998 lncRNA downstream 24124 10257259 ~ 10270411 (-) False G37258
TU49993 lncRNA downstream 34175 10257259 ~ 10260360 (-) True G37258
TU49994 lncRNA downstream 34175 10257259 ~ 10260360 (-) False G37258
TU50000 lncRNA downstream 41982 10252158 ~ 10252553 (-) True G37260
TU49856 lncRNA downstream 234128 10059804 ~ 10060407 (-) True G37165
TU50031 lncRNA upstream 62098 10387917 ~ 10396255 (-) False rhobtb3
TU50051 lncRNA upstream 128142 10453961 ~ 10456420 (-) True G37305
TU50074 lncRNA upstream 162981 10488800 ~ 10490052 (-) True G37321
TU50126 lncRNA upstream 226474 10552293 ~ 10553381 (-) True G37361
TU50133 lncRNA upstream 334967 10660786 ~ 10661268 (-) True G37364
XM_039797563.1 mRNA downstream 78403 10204986 ~ 10216132 (-) True wdr1
XM_039797559.1 mRNA downstream 93794 10101729 ~ 10200741 (-) False slc2a9l2
XM_039798072.1 mRNA upstream 69869 10395688 ~ 10419906 (-) True rhobtb3
XM_039799092.1 mRNA upstream 96025 10421844 ~ 10424787 (-) False rfesd
XM_039799093.1 mRNA upstream 96025 10421844 ~ 10423913 (-) True rfesd
XM_039798074.1 mRNA upstream 108381 10434200 ~ 10442069 (-) True ube2r2
XM_039798073.1 mRNA upstream 108381 10434200 ~ 10442068 (-) False ube2r2
XR_005638890.1 other downstream 288362 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 898965 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1260868 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1260963 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 166471 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 168384 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 209135 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 606590 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 606590 10932409 ~ 10943628 (-) False fam219aa

Expression Profile