RNA id: XM_039796799.1


Basic Information

Item Value
RNA id XM_039796799.1
length 5078
RNA type mRNA
GC content 0.50
exon number 30
gene id pbrm1l
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19096113 ~ 19109230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCTTTCCTtctctacacacaaacacaacctcGGCTTCCGGACAGAAGTTTTCAAACAACACTCGCTAGCCAGCTAGgcgttacattttttttgctcAGGGAACTACGCCAAACTTTGCCGAGTTTTGGctaGCGGGCTAGCCTGTTGTTAAAGCAACCAGCGATGTCAGCGAGCTCCAAGAGGCGAAGAGCCACTTCACCCTCCAGCAGCGTTAGCGGAGGGGGGGACCTCGATGATACCTCCTCCTCTACACCTGGAAgtggaaggaaaaaaagaagaatatcTAATGTTCCTCCGGTAGATACGATTGCTGTATGCCATGAGCTGTTCAATGCTGTCAGGGATTACAAGGATGACCAAGGCAGGCAGCTTTGTGAAGTTTTCCTCAGGGTACCAAAGAGAAGGAATCAGCCTGATTATTATGAAGTGGTTTCCCAGCCAATTGATATGACAAAAATTCAGTATAAACTGAAGTCAGAAGATTATAATGATGTGGTGCAGCTTACTGCAGATTTCCAGCTCATGTTCAACAATGCCAGATCATTCTACAAGAGTGACACTGAGGAATATCAAGCTGCATGCAAGCTGTGGGAGGTATATTTGCAAACAAGGAGTGAGTTTGTGCAACCTGGGGACGGAGATGAGGATGATGAAGATGGTGATGATATGTTGGATAATCCAGGAATGTCCACTGAGGATGAGACCCCAACTGGCAATTTGAAGGAGGTGCTTGAGCAACTCTTGGAGGCTATAGTGTCACACGCTGATCCCTCAGGGCGCCTGGTCAGTGAACTGTTCCAGAAATTACCTTCCAAAATGCATTACCCAGACTACTATGCCATTATAAAGGAGCCAATAGATCTGAGAACGATCGCTCAAAGAATACAGATCGGATTCTATAAAAGTGTCAATGCGATGGCCAAGGACATTGACCTGatggccaaaaatgccaaaacatacAATGAACCAGGATCTCAGGTTTTCAAGGATGCTAACACCATAAAGAAAGTCTTCATCCAGCGGAAGACTGAACTTGAACACGCTGAACCCACTAAATCTAGTCTACGTATCAGGAATCGCAGGTCTGGTCATGGGGACCGACTGTCTGGAGTCAGCGTAGCTCTTCACTATGGCTCAGAGAGTGAGGACGACCCTGTGCTCTCTGGCTCTGTGTGCTACGACGAGGGAGAGTCAGAGGCTGAGAGTCAGAGTTCTAGTATGGAGATGAGCAACCCGATCTTCCAGTTGTATGAAGCTGTGAGGGGTGCCAGGAACAACCAGGGCCAGATCTTCTCCGAACCTTTCCAGCACCTGCCCTCTCGCAGGGAGTATCCGGACTACTTTCAGCAGATCAAACAACCCATCGCTCTGCAGCAGATCCGGGCAAAGATGAAGAACGGCGAGTATGAAAGTCTGGAGCAGATGGAGGCTGACCTCACTCTGATGTTTGAGAATGCAAAGCGCTACAACATGCCTAACTCAAGCATTTACAAACGGGCCTTTAGGCTTCAGCAGATCTTGCAGGCCAAAAAGAGGGAACTTCTCAGGAGAGACGATGAGGATGGAGACAGCATTCTGTCATCTGATGCAGGGAGCATCAAGAGGAAAAGccacaagaaaaatgtcaaaaagaacCGAATGAAAACCTTATACGCCGCAGTGACCGAGGCTAGGGAGGTTGGCACCAATCGTCGTCTTTGTGATCTGTTTATGGTCAAACCATCGAAGAAGGACTACCCTGACTACTATAAAGTCATCCTTGAACCAATGGACTTGAAGACCATTGAGCACAACGTCCGCAATGAACGCTACGCGGCAGAAGAAGCTCTGATGGAAGACATGAAGTTGATGTTCCGTAATGCCCGGCATTACAACGAGGAGGGATCTCAGGTGTATAATGATGCTGATGTTCTGGAGAAGATACTGAAGGACAAGCGTAAGGAGTTGGGACCTCTGCCTGAAGAAGAAGATGTGGGATCTCCCAAACTGAAACTAAgAAAGAGTGGTGTTTCTCCAAAGAAGTCAAAATACCTCACTCCTCTCCAGCAGAGGTTAAATGAGCTCTACGATGCTGTGCGAAACTTCACTGACCGTCGAGGTCGGCGTCTAAGTACAATCTTCCTACGTTTGCCATCTCGTGCCGAGTTGCCTGACTACTATGCTACAATCAAGAGACCCATCGATATGGAGCGCCTGCGGAGCCATATGGCGGCCGGCCGTTACCAAGACGTCGAAGCCCTGGTGGAGGACTTTGCTCTTATGTTCAACAATGCCTGCATTTACAATGAGCCAGAGTCTCTGATCTACCGGGATGCTCTAGTGTTACACCGGGTGCTGCTTGAGACACGCAAGCAGCAGGAGGGAGGCGAGGACTCTGGGCCTCCTGCTGTGGGACCTCTGGTGCGGGAGCTGATCAGGAACCTGTTTGTGTCCGTGCTGGGCCACCAGGATGAAGAGGGACGATGCTACAGCGACTCGCTGGCTGAGATCCCCGCTGTGGATCCAGACGCCCCTGAGAAACCACCGCTTAACTTTGATGTCATCAGGATGAACGTGGACCGTGGCCGCTACAGGAGACTGGATGTCTTCCAGGAACACATGTTTGAAGTGCTGGAGAAGGCGAGGAGGCTACACAGGACTGACTCCGAGATATTTGAGGATGCGGTGGAACTACAACAGTTTTTCATTAAGATCAGGGATGAGCTATGCAAGAATGGAGAGATTCTGCAGTCGTCTGCACTCATCTATACATCAAAACACCTGCACAATGACGTGGAGCaggaaaagagggagaaaatTCCCAAAGAGATTGAGGAGGACAAGCTgaagatggaggaagaggagggggataacaaagAGGGTGAGAAAGCCAAGGACCTGCCAGGAGAGGCATGGCAGTCAGAGTCTGAGACGGAGCGTGTGTACAGCCAGGACTGCAGCTTTGAAAACAGCACCTATCATGTGGGGGACTTTGTCTATGTGGAGCCGTCAGAGCCGAAATTGAAGCCACATATCGTCTGTATTGAACGCCTGTGGGAGGATGAAGCAGGTGGGAAGTGGCTCTATGGCTGCTGGTTCTACAGGCCAAGTGAAACCTTCCACCTGGCAACACGCAAGTTCCTGGAAAAGGAGGTCTTCAAGAGCGACTACTACAACAAAGTGTCGATCAGTAAAGTTCGGGGCAAATGTGTGGTCCTGTTTGTAAAGGATTATTTCAAAATGCAACCTGAGGGCTATAGAGCCGAGGATGTGTACATCTGCGAATCCCGCTACGCTGCCAGGAACAAGTCGTTCAAGAAGATCAAGATATGGGCCATGCCTGTGAGCTCTGTGAAATTGGTCCCTCGGGAGGTGCCGTTGCCCGTCGTCCGTGTTGCTTCTATGtttgccaaacctgaccaggaCAAACTGACAATTTCATATGCAGGCAGTGGCAGTTTTGTGGACAAGGAGAGAGAAGATGTCCCTATGGAGATGAGTGGAGGCGAGCCCGGCTGTCAGTATTATGAACAGTTACGCCACAACAACATGTGGTTTAAAGTGGGAGACTGTGTTTACATCCAGTCACATGGTCTGTCAAAGCCCCGGGTTGCCAGGATAGAGAAGCTGTGGGTGCAGAATGGAACTACTTTCTTCTTTGGGCCCGTCTTCATTCATCCTGAGGAAACAGAGCACGAACCCACAAAGATGTTCTACAAGAGAGAAGTGTTTCTGAGCCATCTGGAGGAGACCTTGCCCATTACCTGTGTCATAGGCAAATGTATGGTGTCCTCCTTTAAGGACTACCTGTCATGCAGACCTACCGAGGTTTCAGAAGAGGATTTCCTGCTTTGCGAGAGCCGCTACATTGACACAGAGAAGCAGATGAAAAAGTTCAAGGGTCTGAAACGCTTCTCATACTCTTCCAAAGTGGTGGAGGATGAGATCTACTATTTCAGGAAGTTGATGGTCCCACAGAAGGAAGCATCGCCTCTTTTGGACAAGAAGATCAGTGAGCTTGAGGTTAAACTGGCAGATATCGAGGATGACGATATGGAAGATATGGACGACGACGAGGAGGCCCCCCAGACACCTTCTATGCCTCAGATGCAAACCCCTCTTGCAAGTGATATGGACACCATGCCATACACTCCTTCTCAGTCCACTCCTAAGGTGAAGGGATTGTCTAAGAAGGAAGGGGCCAAGAGGAAGATCAACATGAGTGGCTATATCTTGTTCAGCAGTGAAATGCGTGCAGTCATCAAAGCTCGACACCCAGACTTCTCGTTCGGGGAGCTGAGTCGACTCGTGGGCACCGAGTGGAGGAACCTCGAGGCGACCAAGAAAGCGGAGTATGAAGAACGTGCAGCCAGAATAGTGGATCAACAAGAGCGTGACAGACCACCTCAGAAGCAAGCGTCCCCTAGAGCAGGTACCCCCATAGGGACACTGATGGGGGTGGTGCCTTCGCCTAGCACTATGGGAATGATAAACCAGAACATGACACCTGTGTCAGGCATGATGGGAGCTTACGGCCCACCTTACATGCCCATGCAGGGCCCCCATGAGGGCTTGTTGAGTGTGGCCCCAATGTCACCTCACCCTGCAGGGGGGGCCCTCCTGCCTCTTCATCTCCAGCAAGGTATGCCTGGGTACCCTGGCATGCCTCATCAGGGTATGATGGCCGCAGGTATGAATGGCATGGCAGGAAGTCCTGCAGCAGGAAACTTTATGCAGCAGCCTGGGATGTTCAGCCCAGGACCACATGCTCCTCCACCATATCCTGGACAGGGCCAGCCCTCACACCTGCAGCCCACCACTCCCATGTTTGTGGCTCCACCACCAAAGACCCAGAGGGTGCTCCACTCAGAGGCCTACCTGAAGTACATTGAGGGCTTGAATGCAGAGTCTAACACTGTCAGCAATTGGGACCAAACACTCAAAGGTTGTGTTCCTGAAGTCGTCTTTTAATTTGGGGGCTCAAAGGCATGCTCACCTGACCAAAGAGCAGGAGAGCCGACTGCCAGCTCACTGGCTGAAGAGCAAAGGAGCCCACACCACCATGGCGGATGCACTGTGGCGCCTGCGTGACCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53886 lncRNA upstream 19076 19075740 ~ 19077037 (+) True G40073
TU53875 lncRNA upstream 37535 19054128 ~ 19058578 (+) False G40064
TU53874 lncRNA upstream 37535 19054191 ~ 19058578 (+) True G40064
TU53857 lncRNA upstream 107429 18988444 ~ 18988684 (+) True G40049
TU53678 lncRNA upstream 493013 18601716 ~ 18603100 (+) True G39935
TU53931 lncRNA downstream 59902 19168836 ~ 19169391 (+) True G40104
TU53937 lncRNA downstream 64215 19173149 ~ 19178937 (+) True G40109
TU53974 lncRNA downstream 136839 19245773 ~ 19248346 (+) True G40139
TU53976 lncRNA downstream 136839 19245773 ~ 19248346 (+) False G40139
TU53996 lncRNA downstream 187325 19296259 ~ 19314137 (+) False oxtrl
XM_039796808.1 mRNA upstream 26139 19063609 ~ 19069974 (+) True LOC120556926
XM_039796810.1 mRNA upstream 26139 19063613 ~ 19069974 (+) False LOC120556926
XM_039796811.1 mRNA upstream 26139 19063656 ~ 19069974 (+) False LOC120556926
XM_039796812.1 mRNA upstream 26139 19063663 ~ 19069974 (+) False LOC120556926
XM_039796796.1 mRNA upstream 33202 19060361 ~ 19062911 (+) True si:dkeyp-67f1.2
XM_039796801.1 mRNA downstream 446 19109380 ~ 19123406 (+) True stau1
XM_039796803.1 mRNA downstream 446 19109380 ~ 19123406 (+) False stau1
XM_039796804.1 mRNA downstream 446 19109380 ~ 19123406 (+) False stau1
XM_039796805.1 mRNA downstream 446 19109380 ~ 19123406 (+) False stau1
XM_039796802.1 mRNA downstream 446 19109380 ~ 19123406 (+) False stau1
XR_005639014.1 other upstream 870074 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 902187 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 902187 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 1169226 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 1202693 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 215895 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 508247 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 508247 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 742614 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 808955 19917889 ~ 19923549 (+) False abhd14b

Expression Profile