RNA id: XM_039796813.1


Basic Information

Item Value
RNA id XM_039796813.1
length 2212
RNA type mRNA
GC content 0.44
exon number 5
gene id si:dkey-7k24.5
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19130277 ~ 19136486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGTTGAACTCCTGATGGTCGCATTGCTTACCACATATGATAAGTGTTAATATTAAGACTTTTAAGAACTTTAACTGGACAGTACTTTAAAACACTTTTCTGGTGAATAACTCCATACAGGGATTAGGCTACCGCTAAGTCgtttttgcataaaaaaaaaaaaactccctgaACGTGTTGAGGTAGCCTACATGTTGTGATGGCAGTCAGGAGGAGCAGCTCTGTCACTTTGGTTTGTCTCGGTGTGTCTTTGTTCATCATCGGTCCGTGTCAGTCGGGCTGTCGGGAAACAGGTCTGTGTTGCACCGGCCGGGACCCGTCATGCATCAGCAAAGGATGGAGGTCTGACCGGTCCTATGGCACCTGCTACTGCGACCAAGCCTGTGTGTCCACCCTGGACTGCTGCCACGACTATGACACAGCCTGCCCAGCGCTGTCCTGTGTAGTGAGCGAGTGGACAGAGTGGTCAGGCTGTGCCGAGCCCTGCAGGGCCACAGTCCGCAGGCGGAGCCGGAGGATCCTGCAGGAGCCACTCAATGCAGGCAAACCCTGTCCCCATCTAGAGGAGCATGCCGGCTGTGCAGAGTACTGGTCTCAGCAAGGGAACTGCCAAAACCCACTTGTCCCAGCACTGATTATTGCGGGTGGCTATGGCAACGCCAGGAAGAAAAGAGACATCCCTGACAGCAGCGACATTATAGGaaaTAGGTATTGTGTCCAGTTTCAGTTGACCTCTCTGACAAAGGGATGCCAGCAGAGTTCAGGCCCACACACCCAGTGGATGCAGCACCTGAGGGAGGGGCATCATGTGTGTGTCGAGTGCCAGCCGCCTGCTCTCGCTGCTGGACAGACACACTGTGCTGGAGATGGAGAGGAAAACGACGAGGGCAGAAGGCAGTCTCTCCAGTGGCAGGCTGTGGGAAACCCTCGATGCAGGGGTGTGTGGAGGCGTGTTGGGAGGCTGGAGGCCTGCTCCTGCCCAACAGCCCGCAGCTTCCTATTCATCTAacctcctccttccttctgTTAGCCTCCCGCCTGTACATATTTACTCAGAGTTGTGTATAAAAAACAATCTGCCAGAATAATTAGAAACCAGCCAGAATAATAAACACTGGTCGCTAACCTGATCTATTAAAGAGTTCTGGTCAATGCTTAGTTGTGCCTTCTCCAAATTAGTGCaacaacatgtttacattttattaatatGGCTAAATGTGTGCCAATGAAAATGTCCTATTTCTTAATCAGAATACAATACATTTCTTGTCCTTACTGCTCAACAAGAACTTTAATATAGTAGTAGTAAATACATATTCCCATTTTGGTTTGCATCAAAAACTGCAAATTAACAGTGAAATGAAAGTCAGAAATGCCTAATCAAAATGTAAAGTGATctgatttatttcattttattcatcCAAGGGAAATGTTGCTTTTCTTAAGAAATAGAAATATCTTGGGACATTGAGACACTTTTTTAACATGACAAGTACTGGCTTTGTGTGAATCACAACCAGTCACAACGCCAAAGTTACAACATGCACTAAACAATTGAACATTTATACAGAAACAACAGCATAGAAAGTCAACAGGTAaaaatgtgttgctttttttttttacaaaacagaCAGCCTGTGGACCTACAAACAACATTGTATAAGAGCTGGCTAAGGTCGttcaaatatcttttttttttattccctggAAACAGTGTACTTTACAAAGACTGATGGCTTAGGCAAGGTTGGGGTCAATTCCACTGAGAGCTTTGAACGTAGAAAAAATATAGTTAATGTTTTTGTACTTGGTTTTAATTTGTCCCATGCTCTAATACTGGCTCCTTTTAGAGTgtcatgtgtgatgtgtgttgtaCTCCATCAAGGCATCCTGAATCGACCCCAACCCTGTAATACAGTGTTAGATTCAGAGTATGTGGAATTGGGCTACTTGctaaagcagtggttctcacTGGGTTTTGGAAACTACCACATGTCCTTGAAAAAGGGTCCTATGGGGTtttaacaaaaaatgaaaaagacttGAACCTCTAGCAGTTAAATTTAGCAGGTAGTGCGATAAACAAGTTCTATTGTAGGTTTCAACTAAATGCATTTACTGTACAGTTGGGAGTCTTGTTATAGAACATTTTGAGAATCTGTGCTCTTTATAGTTTGTATCaataaatgagaaataaaacaagTCCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53886 lncRNA upstream 53240 19075740 ~ 19077037 (+) True G40073
TU53875 lncRNA upstream 71699 19054128 ~ 19058578 (+) False G40064
TU53874 lncRNA upstream 71699 19054191 ~ 19058578 (+) True G40064
TU53857 lncRNA upstream 141593 18988444 ~ 18988684 (+) True G40049
TU53678 lncRNA upstream 527177 18601716 ~ 18603100 (+) True G39935
TU53931 lncRNA downstream 32350 19168836 ~ 19169391 (+) True G40104
TU53937 lncRNA downstream 36663 19173149 ~ 19178937 (+) True G40109
TU53974 lncRNA downstream 109287 19245773 ~ 19248346 (+) True G40139
TU53976 lncRNA downstream 109287 19245773 ~ 19248346 (+) False G40139
TU53996 lncRNA downstream 159773 19296259 ~ 19314137 (+) False oxtrl
XM_039796801.1 mRNA upstream 6871 19109380 ~ 19123406 (+) True stau1
XM_039796803.1 mRNA upstream 6871 19109380 ~ 19123406 (+) False stau1
XM_039796804.1 mRNA upstream 6871 19109380 ~ 19123406 (+) False stau1
XM_039796805.1 mRNA upstream 6871 19109380 ~ 19123406 (+) False stau1
XM_039796802.1 mRNA upstream 6871 19109380 ~ 19123406 (+) False stau1
XM_039796816.1 mRNA downstream 49939 19186425 ~ 19225219 (+) True LOC120556929
XM_039796418.1 mRNA downstream 169716 19306202 ~ 19314826 (+) True oxtrl
XM_039797186.1 mRNA downstream 198048 19334534 ~ 19342023 (+) True rrp9
XM_039797187.1 mRNA downstream 198051 19334537 ~ 19342023 (+) False rrp9
XM_039797196.1 mRNA downstream 285574 19422060 ~ 19423856 (+) True LOC120557156
XR_005639014.1 other upstream 904238 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 936351 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 936351 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 1203390 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 1236857 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 188343 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 480695 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 480695 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 715062 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 781403 19917889 ~ 19923549 (+) False abhd14b

Expression Profile