RNA id: XM_039796824.1


Basic Information

Item Value
RNA id XM_039796824.1
length 4116
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120556934
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15824383 ~ 15833934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTGCTGGTGGAGAATGTTAGTAAACTGTTCACTGACAGCCTGGTTAGCTGTCATCATCACGCCTCGCCACCTcttacgttagctagctaactaaatgtcttaatGCGATGAACCGGGAATTTATTGATCATGGCTAACCTACGGATTTCGTTAGCTGCCTTGGTTGTTCAGGTCGTCCTGTACAGAAACTGCGAGGCTCTGTGGTGTAACTGCACCACTGCCCAGTGCGAGAAGACTGGCTACCAGTGTGAGACCGATGGAGCCTGCAAGGCCTCCACTTCCTTAATTGATGGCCAAGAGCAGCACATCCGTATCTGCATCACACGGGACAATCTTGTGCCCCCCGGACAACCGTTCTACTGCCTCAGTGCAGAGGGCTTGCTCAATACCCACTGCTGCTACACAGACTACTGCAACAGCATTGACCTCAAAGTACCCTCAGGTGAGAAAGTCACAACTCAGTCAGGACTCGGGGGAGGCTATGGCCCTGGTGGGACATGGGTGCTGGTGGAACTAGTCGCTGTGATTGCAGGGCCACTGTTCCTGctgtgtctgctgctgctgatgtgtATGTTCCTGTATCAGTACCACCAGCGGGCCTACAGCCACAGGCAGCGATTGGAAGTGGAGGACCCCTCCTGTGACCACCTCTACATGGCCAAAGACAGGACCCTGCAGGACCTTATATACGATCTGTCCTCATCTGGTTCAGGCTCCGGTCTGCCTCTGTTTGTCCAGCGAACCGTGGCGCGAACAATTGTCCTCCAAGAGATCATTGGTAAAGGGCGTTTCGGGGAGGTGTGGCGAGGACGTTGGAGGGGCGGTGATGTGGCGGTGAAGATCTTCTCATCCAGAGAGGAGCGCTCCTGGTTCCGTGAGGCTGAAATCTATCAGACCATTATGCTCCGCCATGAAAACATCCTGGGCTTTATAGCTGCTGACAACAAagACAATGGCACTTGGACCCAGCTGTGGTTGGTGTCGGACTACCATGAGCATGGCTCTCTGTTTGACTACCTGAATCGCTACTCTGTCACTACTGAAGGAATGATCAAACTGGCACTGTCAGCTGCCAGTGGCCTGGCACATCTGCACATGGAGATTCTAGGAACACAAGGAAAGCCAGGTATCGCGCACAGAGACCTGAAGTCCAAGAACATCCTCGTGAAGAAGAACTGCACCTGTGCCATCGCTGACCTGGGCTTGGCTGTCCGTCATGACTCTGCAACAGACACCATCGATATTGCGCCCAATCAGAGGGTGGGCACCAAGAGGTATATGGCTCCAGAGGTTCTGGATGAGACTATCAACATGAGACACTTTGACTCATTCAAATGTGCTGATATCTATGCTTTGGGGCTGGTCTACTGGGAGATTGCATGCCGCTGTAATAGTGGAGGTATCCATGAAGAGTACCAGCTGCCCTACTATGACCTGGTACCTTCTGACCCTTCCATAGAGGAGATGAGAAAGTTGGTGTGTGACCAAAAAATACGACCCAACATCCCCAATTGGTGGCAGAGCTACGAGGCCTTGCGGGTTATGGGCAAAATCATGAGGGAGTGTTGGTATGCTAACGGTGCTGCACGCTTGACGGCCCTGCGCATCAAGAAGACCCTCTCCCAGCTCAGCGTTCAAGAGGACATTAAAGTCTGAGCAGTCAGCAGAGCGCTGAGAAAGAGCACTGAGCAAGAGCCGACTTCAGACTGTAGGACACTGAGAGGAGGTGGCGGGGCCTTCTACAAAGAACGCACAGAGTAAGAGAATATGATGGAGATTCGCACTTTGTAAAATATTACTACATAGACATTCCTGCCAGTTTTGAAGCCACTTGATTTTTGACAAACCCTACCTCGCTTACCCAGCCAAACTACCAAGAACACCTTTCCTGTCCTCAGCTACTGCTGCCCTTGTTGTTCCTTTCTATATTCCGTACTATTGAGGATCCTTGGATTTCCTGTGTACTTGTATGCAATCGATAACAGGATAAGTAATTAACcatttaacattttgaaaatcagttGCTGATATTTCCTCAAAGTCTCTTTGATCACAGTCACTTAATAGTTAACAAACAGTATTTTGCTCTTTTTGTCTTTGAAAGGGGGCAAGCTGGGAGGGTTAGGAATGTTTTTAACTTacttttttctgttatttaaatgACTAGATCTTGTGTGGCTATTGTGCAGGTTTCTCTGTCTCACCTACAGCATACAGGCACATCACAAACTGCTTAGAAATCCTTGAAAGACAATAATCCATCTGGTTCTGCTACAGCTGTGTTGTTGAGTTGTCTGCAGATAACCATGTAAGCATGTACAAAGCAGTTGAGGAAGTTTGTGTAAATGCAGCCCATTTGCTTTCAACAAGGTGTTTTAAGACTTTGAAGTCACTGGAGCGTAAGTGCAACTTGTCAAACATGATTTGGCCTTTGGACCACTTGCCTGGAGCCCTTCCATAAGCTGTTGTAAACCTCAGGTTTTCcttatgtttttgtcagtttagAACCATGTTAACCACGTTATTTACAATGTTAAATACAAATGTAGGATTATTAAGCAAAAATGCATTTCACTTGGACAGTACATGTAGAGCAACCGCTGCCAGGCACTTGATTTTTTTAGCTGACACACTCGCTGGCTTCAGATTGGGACACTTCTTGCAGAAAACACATGTATAATATTTAAATGGTTGTATTCCAATCTGATTGTCTCTCGATAGACCATAACCTGCCATGAGAGTAAACATTGCTCCAGCCCCTCAGATAAACTGGTATACACAACATTCTGATAAACCTTTCGCCCTTTGCAGCAGCCAATACTATTTACACTGTACTTTAAATACAGggcaaaaatgttttatttttaatacactAACTTCAGGAATCTGAATAatagtttgtttttatgttaattttTGTATATTGTCAAAGCATGTCCAATGTTCTTTTCCATTCAGGGTGCATTTTCCCTGGCCAAGTATAACTACTGCACATACAATAGCTTTTTAAGGTGATACttgtgtaaataaatgtatgttGGTACTTAGGTTATGTTTTAGATGGTTAAATCTTTTATATCAGCTTTTTGGTTGGTTGGAAGAAAATTACTTCTGTCTTGACTCTTGCTGTAATATTTGACCTCTGAAGTGACATTACTGGATGTGTCAGACACACTGCTGATGCTGACTTTCTCCTATAGCCCTCTACTACTGCAGAGCAGTATTTAATTCTTAATCAATGTTTTCCCCTCACAACTCCTTTTGTTCACCATACATTACCTCCTTAATGTGCAAATTGTATGTGGATTGTTTCCATCAAGCTACCATTGTCAGAAACCACTgtctacattttatttgttttcaggAAAAAAGCTGCACTTTTGTCTTTAGCTGTAGCCAAATTCAATAGgtactgtctgtgtgtagtcTTTCCCATGCTATTTATATTTGTATGCTGTGagtctatataaaagcctgAAAGGCCACATGTGCACTACTACTGACCTTGCAGCATTAAAACCAAATTGTTGATGAGAACAACAATGAGAATGTTTATACAAATCATGCCAACCAGTTGCAGTACAATTTAACTGGAAACTGTAAAGAGAGTCTGACTTTTTCTTTGAGAGAAGAAATGTTGAAACTAAATACTACTAAAATGTCTCAATGCTGTCTCACAAATGTGTTTGACCAATACTTAAAATCACTTGCTCACTGCACTGTATTGTATTAGTCTAACAGGATGTTTGTAAGAACGAAAAGACTGCCCTTGATGCTGTTGTTTTTGACTGTGGAGCTCTACTGTTTGATAGGTAGTGTAGTGTTAACCATATTTATACACTAAAGGGGCATGCTTGTCAAATTGTATCTGCCTTACAATGTATACAAATGCATAGTGTATTTAAGGTTTTGATACCTTGTTCAAAGTATACTCATGGATAATTAGGAGGGTGTGAGTCAAAGAAATTAGGTATTATTCTACAGTTTGTGACAACTCCCAAGTCTCTGTCAGGTCATGGCAAAGAAACAACAGcatctatgtaaaaaaaaaaaacttcaggaCTTCAATCATGTACCTTCTAATATAGAGTAATAAATGCAATTGTTTTCCAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52211 lncRNA upstream 62068 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 69324 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 94983 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 102199 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 179984 15644061 ~ 15644399 (+) True G38832
TU52290 lncRNA downstream 80605 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 85451 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 85496 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 102407 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 150690 15984624 ~ 15985096 (+) True G38966
XM_039796826.1 mRNA upstream 818 15818623 ~ 15823565 (+) False ankrd33ab
XM_039796827.1 mRNA upstream 818 15819427 ~ 15823565 (+) True ankrd33ab
XM_039798865.1 mRNA upstream 34478 15772189 ~ 15789905 (+) False b4galnt1b
XM_039798862.1 mRNA upstream 34478 15776463 ~ 15789905 (+) True b4galnt1b
XM_039798864.1 mRNA upstream 34478 15778017 ~ 15789905 (+) False b4galnt1b
XM_039798051.1 mRNA downstream 18063 15851997 ~ 15859771 (+) False LOC120557571
XM_039798053.1 mRNA downstream 18274 15852208 ~ 15859771 (+) True LOC120557571
XM_039798052.1 mRNA downstream 18277 15852211 ~ 15859771 (+) False LOC120557571
XM_039798054.1 mRNA downstream 19513 15853447 ~ 15859771 (+) False LOC120557571
XM_039798848.1 mRNA downstream 37784 15871718 ~ 15876860 (+) False arf3b
TU52135 other upstream 176532 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 949924 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1007947 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1486623 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1590858 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 131480 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 215971 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 599304 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 683602 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1278179 17112113 ~ 17119890 (+) True G39351

Expression Profile