RNA id: XM_039796836.1


Basic Information

Item Value
RNA id XM_039796836.1
length 4109
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC120556937
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6466816 ~ 6521161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGAGTTGCTGGTTCAGCCCAAGCTGTTGTCCCGTGAGCTGTTAGATTTGGTGGCCTCACATTTCAACCTGAAGGAAAAAGAATACTTTGGGTTGTCTTACATAGATGACACCGGCCAGAATAACTGGCTCCACCTGGATCGTAAAGCCCTTGATCATGACTTCTCCAAGACTTTGGGGCCTTTGGAACTCAAGTTCCTGGTTTTATATTGAGAAGATCACTTTTTTGAAAGACAACACAACAGTGGAGCTGTTCTTCCTGAATGCTAAATCTTTAGTGTTCAATGAGACCATCGAAGTGGAGAGTGAAAATGTTTTCAAGTTAGCCGCATTCGCATTGCAGGAGGCCAAAGGAGAATACACCAGtgctgAGATTGCCAGGTCAGACCTGAAGCAGCTCCCAGTTCTGCCCACCAGAGTATTAAGGGAGCACCCATCTCTCAATTACTGTGAGGACAAAGTGATTGAACATTACAAGAAACTGAAAGGAGTGACCAGAGGACAAGCCATTGTGCAGTATTTGGCCCTGGTGGAGTCCCTGGCAACATACGGAGTCCATTATTACCCAGTCAAGGATAAGCAAGGAATACCGTGGTGGCTGGGAGTCAGCTATAAAGGCATTGGCCAGTATGATTTGCAGGATAAACTGAAACCAAGAAAGTTGTATCAGTGGAAGCAGTTAGAGAATTTGTATTTCCGTGAGAAGAAATTTGCCGTGGAAGTGAACGACCCACACAGAAGAACAGTGACCAAGCAAACTTTCGGACAGACTGGTCTGGTTATTCACACATGGTATGCCAGCCACACTCTGATTAAAACCATCTGGGTGATGGCCATCAGTCAGCACCAGTTCTACCTGGACAGGAAGCAAAGCAAATCAACGATGACCACAACCAGGAGTTCAGGAGACATCGCCATGGACCTCACCGAGATCTGTGCCCCGCGTATCAGTAAACTTTCCAGCATTGAGAGCAGAGACCAGCTTATCATGGCCAGCAACGGAAGCCTCATCTCAGCCGGTTCTGCTGACTCTGAAGTCAGCGAGGaacagaagaaagagaaggttGCTGAgttgaaaaagaaagagaaggaccttaaagacacactgacacagaaacTTGAGGAACTGAAAAAGATCTGCATGAGAGAAGCTGAACTTACTGGCAGATTGCCTAAAGAGTATCCCTTGGCCACAGGTGAGAAAGCTCCTCACGTACGGCGCCGTGTTGGGACAGCCTTCAAGCTGGATGACCTTTTCCCCTATGATGAGGACCCGCATCTGAGGAATCTGGAGAGCAGGTTCGCCTTGCAGCAGAAGATCGTGGAAGCAGCCATCAAATTATCCAACGAGGGTGACCTCTGCAAGACGGtgaagaaaaagaggagaaacaACTGTCTGGATGCGATGAGGAAGCTGGAGGAGATCGAGAGGGAGATCAACGCCTACAGGATCAAGAAAGGAAGGAAACCCACCCAGAGAGCCTCACTGATCTTAGCAGATGATGTCAACCCTTCAGACCTCAGCTCTCTATCTGACAGCCTCACTCTGGATGACGATGATGAGCTCAGTTCCCAGAGGCAGCGGTCCAGATCGGTTCAGTATTCCCCAAGACCACACCATGCAGAAACCCTGGACATCCACTACAATAATGACAGACGGGACTCTGCCAATGACGAGCATGCAGACAGCAGATTATATTACGGCCAAGTCCAGGAATCTCTCCACTACAGTCACCGTAATGCCTTATCAAGCCACAGCAGCCCGTTTAAACCGGCTTCCAGACAGCCACGTGATGCCCGCAGcatgccccccacccccctccttaCCCGCAACGCCTACAGCAGCACTCAGCTCAGATCAGAGGATGCTCCACAACATTTCCGCCAGCGTAGCGGTAgtctggagtcccagtctcagCTCCTGACAGAGACAGAACCCCCCGTGCCAACGTACACCTTCTCCCCAGCCCGACGCAGCAACAGCACCGAGGTCCTCGATGATGGCTCCTCCTACACAAGCCAATCCAGCGTCGAGTACAGCATCCCTGGTAACCACACGCACAGGCGCAGAGCTCGCGGCCGCCACAGAAAAGACATGTACGCCAACACGGGTAGCATGCCTAACCTGGCTCAGCCCGACACCCGCTGCTACGCCTACCAGCCACAGGCCAGACCCACCACGACGGCCTACTACGTGACGGGTTATCCCAGCTACGCAGAACCAGAGCCTTACTCCAATGGAGTCTACGTGTACGGCAATGAGATGGAGGGACACTATAACGTCAATCCTTCATACAACCCCACCCCAACAGCTTATCACAGCCACGACATGCACAGTCACTATGGTAACGACGAGATAGACAGCATGTCGCAGAACCCGTACGCCACGCTGCGGCCACCCAGGAACCGCCAGGTGCCCCGCAGCAACGAGCAGGTCGGCAAGAACATCCAGAAGGCTTTGGTGGCTGAACACTTGAGAGGCTGGTACCAACGTAAAGCTGAACACAAACAGGCAGCATACAACTACGACTATGACCGAGGCTCCCAGCAGAGCCTGGGCTATCAGACCATGCCTGCACcccacagccacaacagcaggAACATCTCCTACTCCTCAGCGTCCTCCAGTGTAAACTGGCACAACCACATGAGTGGTGGTGGTATGTCAGAATATGACATGCCCATGCACGCGCCGCAGACCTACTCTTACAGTACAGCCCCCTACAGCCACTCCGCCCACGAcagATATGGCTCCTCACAGCTCTTTAAGGGCTCCCAGCACAGCCCTGATGGCCAGAGGCGCTGTGCCTTTTTCCCTGCTAGTTCTTCCTCCTCagcttcctcctccatctcctccctgccctcctcctcctttacctCCTCCTACTCCCCCGGCTGTCGGGTCAGGCAGGTGGCCTCCAGCCCTGCGCAGCCACAATCCTCCAGAGGGCACAGGCTCAGTAAGGTGTCCTTTGCTAAAGGTAGTTCATAATCCTACATAGATGTCAGCCAAATGGACTTGCCCATCAGTAACCAAATGCACACTGACCTGGAGCCCGAGGAGCAGATTTACTGGCATGAAGACTCAAAACCGGGAACAATAGTGTAGTTGCCTGTCTCTCAATGTGCCGTATGAATTTTCACCTTGACAAGTTGTCATTGTGCCTTAGATTGCACTTACCTGTTCTGCTCAAGAGGATCCAAAGAATGAAGGAACTAAACTTCTGTGGGATTCAGCGTGTAAAGGAAATGAAGCCCTCTCCTTTTCTGTTCTCTTGAATGCGATTGCCAAACTGACCCACAACTTTGTGTTTAAATCATAACAAAACCCCACGGGAGCGTCTTCATGTCTGGATTGCAAGTTTGTGGTGATGGCACTTGTTCACTGAAGCTATACCAGGACCTGATGTGGACTAAACTTCTCCAGTGTTTTACTGAAGACATGCGGGCTTCACAAACCAAGGACTAGGACTGTCTCTCTGAGAGGACACCGAGCCGCAACGAACAACGCTCTGCACACATGTATGAACCGTGTAACCATGAAGGATTGGACAAGGATTTATAAGGACATTATCACAATGAAGGATTGAACTCATTAAAAATGAGTCAAAAAGATGGCTACTTCCTGTAGCATTCTGCAGTCACCAGACCTAGTTTTATCATTGCATAGCTTGTATCTACCACACTTTACTCTAGTTTGTCATTTACAAAGTATTCAATCTATCTCATGGTCAGTGCTTACAGTACAATTGAGCCAAATACATGTCACCATTTGAGTATTACCCAAAAGACCAAACTTTGATATCACTGCCACATCTGATAAGTCACTGCAGGAAGACAGAAAATCCAgtcttgttttttattttaacatggtTATTTCATCCATGCTGGAAATCATGGACTGGTGCTCCCAATTTCTCTTAAGAGAATCAagctgtatgtaaatgttggtaTTGTAAATACACTggttctgtcttttttttaagagcattttttatgtatttgagAAGCATGTAATATATAGTAAACAACTGTTGTTAAGCTGGTTCTTAGTAATTTGTATAATTGCATTTGTTtgaattaaaagaaaatcaGCATTTGAAACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48563 lncRNA upstream 61658 6429507 ~ 6433109 (+) True G36231
TU48543 lncRNA upstream 188624 6199783 ~ 6306143 (+) False foxp1b
TU48522 lncRNA upstream 380454 6111677 ~ 6114313 (+) True G36201
TU48491 lncRNA upstream 387615 6106870 ~ 6107152 (+) False prok2
TU48492 lncRNA upstream 438541 6055244 ~ 6056226 (+) True G36175
TU48637 lncRNA downstream 22306 6543467 ~ 6544074 (+) True G36288
TU48648 lncRNA downstream 52985 6574146 ~ 6574347 (+) True G36299
XR_005638905.1 lncRNA downstream 57819 6578980 ~ 6581148 (+) False LOC120556885
TU48649 lncRNA downstream 57819 6578980 ~ 6581303 (+) True LOC120556885
TU48723 lncRNA downstream 251575 6772736 ~ 6773170 (+) True G36353
XM_039796631.1 mRNA upstream 68173 6414966 ~ 6426594 (+) True eevs
XM_039797612.1 mRNA upstream 190384 6139463 ~ 6304383 (+) True foxp1b
XM_039798765.1 mRNA upstream 362128 6118632 ~ 6132639 (+) True LOC120557997
XM_039798603.1 mRNA upstream 387621 6104613 ~ 6107146 (+) True prok2
XM_039797791.1 mRNA upstream 439551 6035072 ~ 6055216 (+) True rybpb
XM_039796838.1 mRNA downstream 8290 6529451 ~ 6537424 (+) False trnt1
XM_039796837.1 mRNA downstream 8299 6529460 ~ 6537424 (+) True trnt1
XM_039796839.1 mRNA downstream 16380 6537541 ~ 6541431 (+) True si:dkey-178o16.4
XM_039799097.1 mRNA downstream 84209 6605370 ~ 6619215 (+) True lrrn1
XM_039796368.1 mRNA downstream 114119 6635280 ~ 6638523 (+) True setmar
TU48489 other upstream 441998 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 570367 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1560603 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1560603 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 1909292 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 114141 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 721048 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1706601 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2095837 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2120869 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile