RNA id: XM_039796837.1


Basic Information

Item Value
RNA id XM_039796837.1
length 2261
RNA type mRNA
GC content 0.45
exon number 8
gene id trnt1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6529451 ~ 6537424 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCTCACACTATTGGTCAGCAAACGCACTTTACCGAAACACTTCCTGCAATGCTTTATGGCAGAGAAATATCAATGAGAAATATAGATAACGGCGTTGTctggtaaacaaacaaaaaaaacttctaTTTAAGTTGCAGATGTGGAGCAGGATATTGAGTCCTCGTGTGATTGGTAGAACAGGTTTCTGTTGGAGGAGTCTTTTCACCATGCAGCTGAAGACCAGTGAGTTCCAGTCTCTGTTCACTGATGGGCTGAGTGGATTAGCAGaggtGTTTGAGAAGCAGCAGCATGAGCTGAGGATAGCTGGAGGTGCCGTACGAGACCTGCTGTCTGGGAAGCGGCCTGAAGATGTGGACTTTGCCACCACAGCCACTCCAGAGGAGATGAAGCGAATGTTCCAAACAGCTGGCATCCGGATGATCAACAATAAAGGAGAGAAGCATGGGACCATAACAGCAAGACTACACAATGAGAACTTTGAGGTGACCACGTTGCGAGTGGATGTTCAGACAGATGGACGTCATGCAGAGGTGGAATTCACCACTGACTGGCAGAAAGACGCTGAGCGGAGAGACCTCACCATcaattccatgtttttagGGCTTGATGGCACATTATATGACTATTTCAAAGGATACGAAGACCTGCAGAACCGAAAAGTTCGGTTTGTTGGCAGTGCTGAACAAAGAATCCAAGAGGACTACTTGAGGATACTGCGTTATTTCAGGTTCTACGGCAGGGTGGCCCTGGCGCCAGATGACCATGAGCCTGAGACGCTGGTTGCTATTAGGGAAAATGGTCGTGGACTTGCAGCTATATCGGGAGAACGGATTTGTGTGGAACTAAAGAAGATGGTTGTTGGTAACCATGCTGATCATCTGCTGGAGCTGATGTACAGTCTGGAACTGGCCCAGTACATAGGTTTACCTCCAGATGGCGATGTTGAGGAGATGAAGCGAGTATGGCAGAACGCCAAAGACCACTCTCCCAAACCTATGACCATCCTGGCTGCTCTCTTCCGCCGCCCAGAGGAGGTGGAAAAGATGGACCTCCGGCTGAAGGTGTCCAGGGAGGAGAAGACTTTGGCTCTGTTCTTGGTCAAATACAGACGGGAGCTCCGCAAGAGCGAAGATGACCCTGACAGCCTTAAACCCTTCACTGACTTCATCATCGACAGTCGGGAGCTGGATTCCCAGAGTAAAGTGTGTGAGCTATTGAAGTATCAAGGTGAGGAGAAACTGCTGGCGGAGCTCTGCAGGTGGTCCATCCCTCGCTTCCCCGTCAGTGGTCACGACCTGAGGAGGATGGGGGTCACGTCGGGCAAGGAGATAGGTGCCACCTTACAGGAGCTCCGCGACATCTGGAAGAAAAGTCGCTATCAGATGGACAAAGATGAACTCCTAAGTTACGTAAAGTCTTAAATGAGGAGAAAAGTGGATGGGTTTTTGTGTCGGACAATAATGATCTGGACACTTACCGCTGTAATCGTGTTGCTCACAGGTATTGATTGAGCAGACTGCTGCACATTGTTGAGAAAGGACATTACAAGAACTGAAACATGCATGGCCACTGATGACTGCAATTTCATATTAAATTAGCCCAATACCACTTTTGTTCTCCTGCATCACCAGGGGTTAAAGTGGGATCTGGCAGAACAAATGTTACACTTTAAAGTTTCTTACTGCTTTTAAAGTCTCTATCCACTACTCGGTACTTAAAGAAAACTCACTTTTAAAGCTGTTAAACCTGTTACTCCCATTATTTCCTTATTCCAAAACAGTGGTGATGAAAATCAGGAGCAATTGAGTTTTCATCAAAACAACATTTTGACTGACTATTAACTGCATCCCAAATTAATCAGAGCACCCAAGGCCAAATTGCATCCCAAGGTACCATTTGACCGGTTGCTGAAAAGCatttaaaggctgttttatctAACAGTCACTCCACATAAAACACACTGGGGCTACATTCACTCCAGCTAACTCGGTGTCACAGCTGCGACCATATAAGAGAATGTACTACTAGACAATGACTGCTGATCATATGTGTTATTACAGAGCTCTATGAAATTCCTTAGATAAACAGCTGTTCTACCGATTCTCAGTTGCTATAGTAAATTATAAATTTCATCGTTAAAACCATAATGGAAAGCAGCAGTATGGTTTTGATTGTTTTAGTTTTCTCCTCGGTTTAACTGCAGTATTTCTTTGCCATGTTTTCTGAACAGAAAATGCTCTATAAAAAGGTTCTACTTTT

Function

GO:

id name namespace
GO:0042780 tRNA 3'-end processing biological_process
GO:0009022 tRNA nucleotidyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48563 lncRNA upstream 96351 6429507 ~ 6433109 (+) True G36231
TU48543 lncRNA upstream 223317 6199783 ~ 6306143 (+) False foxp1b
TU48522 lncRNA upstream 415147 6111677 ~ 6114313 (+) True G36201
TU48491 lncRNA upstream 422308 6106870 ~ 6107152 (+) False prok2
TU48492 lncRNA upstream 473234 6055244 ~ 6056226 (+) True G36175
TU48637 lncRNA downstream 6043 6543467 ~ 6544074 (+) True G36288
TU48648 lncRNA downstream 36722 6574146 ~ 6574347 (+) True G36299
XR_005638905.1 lncRNA downstream 41556 6578980 ~ 6581148 (+) False LOC120556885
TU48649 lncRNA downstream 41556 6578980 ~ 6581303 (+) True LOC120556885
TU48723 lncRNA downstream 235312 6772736 ~ 6773170 (+) True G36353
XM_039796830.1 mRNA upstream 8299 6488470 ~ 6521161 (+) True LOC120556937
XM_039796839.1 mRNA downstream 117 6537541 ~ 6541431 (+) True si:dkey-178o16.4
XM_039799097.1 mRNA downstream 67946 6605370 ~ 6619215 (+) True lrrn1
XM_039796368.1 mRNA downstream 97856 6635280 ~ 6638523 (+) True setmar
XM_039796658.1 mRNA downstream 110891 6648315 ~ 6753630 (+) True itpr1b
XM_039796664.1 mRNA downstream 110891 6648315 ~ 6753630 (+) False itpr1b
TU48489 other upstream 476691 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 605060 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1595296 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1595296 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 1943985 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 97878 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 704785 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1690338 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2079574 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2104606 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile