RNA id: XM_039796899.1


Basic Information

Item Value
RNA id XM_039796899.1
length 3446
RNA type mRNA
GC content 0.43
exon number 13
gene id camk1ga
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36301946 ~ 36327932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGCATGACCGGACGAGGCCCCGCCCCCTGCTCGTGAAGAAGACTAGCAGCCTAGGTGAAACAGTCTACCTCAGACGGATACATCAGGTCACCCAGCTCTGCACCCCTCGTCAGGAGTCTACGGCAACGTCAGAGCCAAGATGGGGCGGAAGGAGATCATCTGCAGCTGGAAGAAAAGCACCAGTAATATCAAGGAAGTGTTTGACTTCATAGGAAAAATGGGATCAGGGTCATTTTCAGAGGTTTTTATGGTGCGAGAGAAGAAAACAGGACAACTGTACGCTATGAAATGTCTGAGGAAGAAACACCTTGCTCATAGCAACCTTGAAAATGAAATCAATATACTGagaagGATACAGCATGAGAACGTAGTGGGACTGGAGGATTTCTATGAGAGTCGGACACACTATTACCTGGTCATGCAGCTgGTGTCAGGCGGGGAGCTGTTTGATCGCATTTTAGACAAGGGGGTGTACACCGAGAAGGACGCCAGCACAGTGATCCAACAGGTGCTGCAGGCTGTCAGTTACCTGCACAAGAACAGCATTGTACACAGGGACCTTAaaCCTGAGAATCTGCTGTACTATAATACAGATGAGAATGCTAAGATCATGGTCAGTGACTTTGGTCTGTCTAAGACAGTGGAGCATGGTATGATGTCCACAGCCTGCGGTACACCAGGATATGTTGCGCCTGAGGTGTTGGCCCAGAAACCCTACAGCAAAGCAGTGGACTGCTGGTCCATTGGAGTTATCACTTACATCCTGCTCTGCGGCTACCCTCCATTCTTTGAAAAGAACGAGACGCGTCTGTTTTCAAAGATCATGAGAGCGGAGTACGCCTTCCATTCACCTTTCTGGGACGACATCTCTGAGTCAGCCAAAGACTTCATCAGGAATATGATGGAGAAAAACCCCACCAAACGCTTCCTCACCGAGCAGGCACTCAGACACCCATgGATTGCTGGAAATGCAGCTAAAGATCTGGACATTTATCAGTCTGTCTGTGAACAGATGGAGAGGAACTTTGCCAAATCCAAATGGAAGAAAGCCTTCAACGCAGCTTCAGTAGTCCACCACATGAAGAAACAGCAGTTATCCCTCACTGAACCCTCTCCCATGCCCAATATCATAGTACAGTCCACCTTCCAGTATGACCAGGAGGTGCTGGGACCCTGTCAAGATGAGGCTGATGCCCTCGACCCAAATGGGAATCCCGTTCTTGTGGCCAATCATCTGTCCTGCAGTAATCCTGAGTCGGACAGAGGTCTCTGTCCACCACTGAGAGCCAGTGAAAATGAACCTGGCAGTGCTCTAGCTGTTGAAAAATCAACAGAGGTCAATAATTTTCTTTCAGAGATCAATGCTCCTTTCAAGCCGTCCAAGAGCCTGGACGCTGTGTCTCAGAGGAAGGACCAGACAGTTCAGAGTGGAGTGTGTTCTGTCATGTGATTGGCTGGCTAACCTGAGTTGAATCTCATGCAGtTTGTCTCTTGAGTTGACGGCACTCAGCAGCATCCCTCTGGATATAAAGGTGTTTAGACATCTGCTGCTCGGCTTTGTCATGTCTGCTGTTGTTCTCTGCTGCAGAACGTATGTTCCATTGACGGAGACACACAGTGCATCTGCACTATAAAAAACACTTTAActgtttatatttaaataacactgcATTAAAACAGACACAAGCAGGAATTCTGTGTCTTGtgttatgctgatgacattTATTCTCTTAAAACTATTATCATGTATTGTATATTACTGTCAACATGTTACTAAATTccattaaaatgcatttgttttgaataGTGACATATGCAATGTGAAAGCTAATGCTGGCTCCTCACTAGAGTGTAATTAGACAGATTTGGGGTCTGATTTGCCCCTCTCGACACAGTGTTCCCGTTTTCCTATAGTGTGAGGGGTTTACAGACACTCTTAATGTTACCGACTGGATTGGAGTCTCCCCGCTCCTGTAGTGTGAGAGGAACAGCGGTGGAATATTGAGCAGGAACCCGCAAAAGCCAATGACAGCGAGCTGATTGGGAAGCATCACTAAACGGAGGTTGCATACTTGTGCAGAACAGAAACATGGCAGCCAACAGCGAGAATAGGACTTTTGTCTCCCCAGCCAGATGGACAGCAGAAAAGCTTGTGGAAGCTTGTGGAAATATGGCAACAGTACTGTATGAGTGCTTGTTTGATGTTGTCCTTTTTTTCCAACCATCTGACGACGACAGTCCGcctccatgttttttttcccttcttctGAAGTCACGTATGATCACGCGAGATTTTTTGAGATCCCAAGTCCCTGATTGCCACTCTGAAACAGTTTAGTTTAAACACCAAGTGTGTGATCCTGACTGAATCATCGGGTGTGTTAATTCTTaccattaaaatatttattatcgGTTAAATCTGACATTTAAATCGGTTAAGAAAAAATATCCTCTAGTGTGCACCTggcattaataataatttttttgagTTGTGTGGCTGGACTTTGAATTCCAATGGCTTATACGTTTTTATAAAGCTGATAAGCTTTTTAAGACTCTGAAACTTCAGAGTTGTGTCATTTGTATGCTTTGTATGTCTTTTTATATGTACTGTTGAACACTATAACAACATATTGGAATGTACCTTCAGCTGTAGTGTTTGGACTGGACCTTGCAGGCAGATTTTTAGACATGTATTACTATTTTTCCATTTATGCAGGATTACATTGGTGGACTATACATCCACTTTACACAAAGATGGTTCTTTGTATTTATGagattaaactttattttgaGGTGGAGTCATTGACACACAGCAATGTGCTGTGTTTTCTATGATATTTACATAAGCTGTACTCTTCCAAGTGCCACGAGATGGTGTAAAGATGCTGCCAACACTAGTGATGTCATGAAGCATTCTGAATTCACAAATGTAGCgacatacatgtttttttttctttttgcatttttttctcaaGCAAGTAGGAACCAGTCTCTTGTGATGAATGCATAGCTACAGTGTCATGACATGTTGGCCTCTTCCATGAAGCTTAAAGACATACATCAAAGTattaacacttttttatttaaatattgtgGATTCTGCacaaacaaaagatgcaaaacagaaaataaataatgtaacatTCACCCTTTTTAAAGTTCTGCAGCACAGTCGTATGTTCACAGTGGAAGGTATTGCTGCTGAAAAATAAAGCTTTGTGTTAAAGCTTTGTGTGGCTCCTTGCTAGAAGTCACaatctgtgcttttttttctaGATTCAATGCTAAATGATGAACATGATATTGACGAactcatatcaaaatgtttctgcccaaatattgaaatgtatttatatactgTGATAATATTGATACTTTCAAAAGGTATTTGCACATGTGGATGTAAATGGAACCATTAAAGTAACCCCCCACTACAATGA

Function

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59098 lncRNA upstream 14650 36286037 ~ 36287296 (+) True G44067
TU59073 lncRNA upstream 90973 36210677 ~ 36210973 (+) True G44044
TU59060 lncRNA upstream 128380 36170653 ~ 36173566 (+) False G44036
TU59059 lncRNA upstream 128380 36171483 ~ 36173566 (+) True G44036
TU59054 lncRNA upstream 144129 36157554 ~ 36157817 (+) True G44032
TU59123 lncRNA downstream 49039 36376971 ~ 36379468 (+) True G44092
TU59211 lncRNA downstream 254595 36582527 ~ 36582888 (+) True G44159
TU59205 lncRNA downstream 350360 36678292 ~ 36679296 (+) True G44153
TU59236 lncRNA downstream 377535 36705467 ~ 36711130 (+) False fezf2
TU59290 lncRNA downstream 974292 37302224 ~ 37302516 (+) True G44232
XM_039797093.1 mRNA upstream 52460 36243657 ~ 36249486 (+) True LOC120557073
XM_039797095.1 mRNA upstream 52460 36245061 ~ 36249486 (+) False LOC120557073
XM_039797092.1 mRNA upstream 59080 36216085 ~ 36242866 (+) True atxn7l2a
XM_039796861.1 mRNA upstream 91459 36182592 ~ 36210487 (+) True sypl2a
XM_039796794.1 mRNA upstream 781998 35517738 ~ 35519948 (+) True LOC120556919
XM_039796420.1 mRNA downstream 38588 36366520 ~ 36368410 (+) True LOC120556721
XM_039796735.1 mRNA downstream 103473 36431405 ~ 36676255 (+) True cadpsa
XM_039796736.1 mRNA downstream 103786 36431718 ~ 36676255 (+) False cadpsa
XM_039796738.1 mRNA downstream 103786 36431718 ~ 36676255 (+) False cadpsa
XM_039796739.1 mRNA downstream 103786 36431718 ~ 36676255 (+) False cadpsa
unassigned_transcript_220 other upstream 339336 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 635905 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 815711 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 861807 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 1634764 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 1838250 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 2284705 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 2572640 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 2625186 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 3486028 39813960 ~ 39821908 (+) False G44581

Expression Profile