RNA id: XM_039796930.1


Basic Information

Item Value
RNA id XM_039796930.1
length 3063
RNA type mRNA
GC content 0.46
exon number 16
gene id eya2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24490859 ~ 24521308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTCGGGAGGAGGAGGAACAAGAACTCTTTGCCCATTTACTTAACATCACTTCCCCACCACCGGGAAAGCAAACAGGCTCCTGAAGCTGCAGAGGTAGAGAAGTGAGATCGATGAGAGCGAGTGTCTGCAGAAAGCTGTGAGCTGTCAGCACCTGGAGCCTCTcgcttcttcttcctcttttccttcTTATTCTTCTCCTCAGGAACTGCGAGTCGTCTCGAACGCTCACTTTGTCACTGATTTTGCCGGGACACTTGTGAAAAGTCTGCGGAGTCCTCTCGGCATGGGAAGACATCTGCTCTAACTGATAATCGGATTTGTTTTTCCTGCACATTCTTCTTTCTGAATAATGGAGAGTTGACAGCTCGAGAGGAACCTGACTAACAGCAGTGTGACGGGCTAAAGAGGATAAAGCTCTCTCTACAGAGCCAGGGCTTCTTATCATCGATTTCAAACACATACTTACTGCGGGATCAGCTGACGGGGAGAGGTGTCATGGCTGCGTATGGACAGACTCAGTACAGCCCGGCCCTCCAGCCTGCAGGGCCATACACACCTTACACTCACCACACACAGGGCTACAGCATGCCATCTTACAACATTAAAACAGAAGACGGCCTGAGTCACTCTCCAGGACAGACGGGATTACTGGGCTACTCAAACTTCAGCAGCACTCCTCCCAGTCAGAGTCTCTACAGCTATTCGCACACACACGGTGGTGGTATTTCATCTGGAATTTTTCAAGGCACCCATGCAATTTCAAATTCAACTCCATTCAACTCTACCCAACAAGAGTTTTCAGCATACTCAAGCTACAGTCAGAGTCAGTACCCTCCATATTATAACTCACATCACTACAACAGCCCCTACCTAACCAGCAGCAACATCAGCCCCGCTGCCATCACAGCTCCGTCAGCCTATCAGCATCCAGAACACCCTGTAATGCTGCCCAATCACAGCCCAGAGCCACACACAGGAGAGTACCACCCACCGCCCAGCCCCCCCACACCAGGTAAAGAGGAGGCAGTCCCAGCACGGAGGGGGTCAGATGGGAAGTtgagagggaggaaaagagTCAGTGACCCCACTCCACCTCTGGACTCTGATATAGAGCGTGTGTTTATCTGGGACCTGGATGAAACCATCATCATTTTCCATTCGCTCCTCACGGGAACCTTCTCCTCACGATTTGGCAAGgACTCCTCAAAGGCAGTGTCTCTTGGTTTGTGGATGGAGGAGATGATTTTCAACCTGGCCGACTCGAGACTCTTCTTCAATGACTTGGAGGAATGTGACCAGGTTCATATTGATGACGTGGCATCAGACGACAACGGGCAGGACTTGAGCACTTACAACTTTGGGTCAGACGGCTTCCAGAGCCCAGCGGGGGCAGGCTCTCTGTGCCTGGGGTCCGGGGTTCACGGAGGGGTGGACTGGATGAGGAAACTGGCTTTTCGATACCGCAGAGTCAAGGAGATCTACAACACATACAAGAATAATGTTGGCGGTTTGCTGGGCAGCCCCAAGCGAGAGGAGTGGTTACAGctgaggagagagatggaggtcCTGACTGACCTATGGCTGACTCAAGCACTCAAATCCCTGGCTCTCATCAACTCCAGGcctaactgtgtgaatgtgttggtAACCACCACCCAGCTCATCCCAGCCCTCTCCAAGGTGTTACTGTACGGTCTGGGCTCAGCTTTCCCCATAGAAAACATATACAGTGCCACCAAGACAGGCAAAGAGAGCTGCTTTGAGCGTGTCTCTCAGAGGTTTGGTCGGAGAGCAGTGTATGTGGTGATAGGAGATGGAGCTGAAGAAGAGTCTGTGGCCAAAAAGAAGAACATGCCGTTCTGGAGGGTGTCCTGTCGGGCCGATCTAGAGGCTCTGAGCCATGCACTGGAGCTGGACTACCTCTAGAGGGCGCCAGCTGTCACGCTCTGCTCTTCCACCCAAATCATGAGAAGCTCCTGAACTCCTGAGTGCAGCTAGTAGGTGAAGCTGCCCCGAGAGACTGATTCAGAGTCAGTATTGCTATTTCAAAGTTTGGCAAAAGGCATTTGATCCCTAATGAGCACCCAGGTggacaatttcactttaaagCCAAAGGAACTGTGAGGATTTCGAAGCGAAAGCTGTAGTGTATCTATGACATAAACATGAGGCCGACAGTGCTGGACCATAATAAAAGACCAAAGACACATAAGGGACCAAAGCTTCATAACTAACCCCAGGGAACTATGGTTAATACTGCAAATACTCTTttactctttcctttttttttaaattcagttcATCTCAACTTTATGAAAGGTGTCCCACTTTTGTACACAAAAAAGTGATGCACTAAATGCAAACATCCTGTTTATTAAACACAGTAAGTATGTCTGCATGGATGAAAAGATGAGATTGTTTGTtcggctgtgtgtgttttttatttgttgtgagACTAAACCCATTTTCCACTGACGAATACTATTTTAAATATAACATTAGAAACAAGACTTCAAGTTATGACGTTATGTGGAATACATTTTGCCTTCATTATCATTTTATAACTGATTTATTCATGTCGGCTAGATAAATGTCAGATATTCTCCTCATAGGTAGAGGCTATTGAAAATAGTTTGATTGTATTTTACCATTTAAATGTGAGCTATTTATTATTggttacattttaaaacacaatGAGGTATAAACAGTTTGGGAGCTCGACATAAAAATATCCCCTTCAAAGACTAAACATatgcttttgtaaaaatgtttcGATAAGATGTTGTCTTGAAGATGCTGTAATATGTAGGCTGGTGCTTGAATCCTTACTTTTGATAATGGGTTGTATATGTTGTCATGTTTTAACGCTCCTTCTTTTCTGTCCTTGTTTAATTTCCTAATAACCTGTTTGTAATATAGATGAACTGGTATGGTTGTGCATGTGCCGATTACACCGCCTGTCAGCTTAGCTATGATTTGTATATAATGCTTTATTGTCGATTTGTTTTGACAGACGGTTAAAATagatgaataaaaataaattaattgcaTTGTTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639015.1 lncRNA upstream 36840 24452621 ~ 24454019 (+) True LOC120557758
TU55632 lncRNA upstream 39290 24436382 ~ 24451569 (+) True G41360
TU55631 lncRNA upstream 53159 24436382 ~ 24437700 (+) False G41360
TU55633 lncRNA upstream 53159 24436382 ~ 24437700 (+) False G41360
TU55624 lncRNA upstream 68976 24419201 ~ 24421883 (+) True G41354
TU55644 lncRNA downstream 291 24521599 ~ 24523607 (+) True G41368
TU55653 lncRNA downstream 19601 24540909 ~ 24542153 (+) True G41375
TU55651 lncRNA downstream 34217 24555525 ~ 24560318 (+) False bloc1s1
TU55650 lncRNA downstream 36352 24557660 ~ 24560318 (+) True bloc1s1
TU55739 lncRNA downstream 400328 24921636 ~ 24921851 (+) True G41441
XM_039798350.1 mRNA upstream 41490 24441312 ~ 24449369 (+) True gcnt7
XM_039798916.1 mRNA upstream 325040 23972393 ~ 24165819 (+) True LOC120558070
XM_039796508.1 mRNA downstream 37243 24558551 ~ 24560002 (+) False bloc1s1
XM_039799125.1 mRNA downstream 40397 24561705 ~ 24567422 (+) True rdh5
XM_039798771.1 mRNA downstream 47183 24568491 ~ 24583147 (+) True gls2b
XM_039798200.1 mRNA downstream 102184 24623492 ~ 24822313 (+) False asic1b
XM_039798201.1 mRNA downstream 102337 24623645 ~ 24822313 (+) False asic1b
TU55524 other upstream 729908 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 729908 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2499060 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4342169 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 4567310 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1747294 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2021199 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2021199 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2131952 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4719105 29240413 ~ 29242253 (+) True G42449

Expression Profile