RNA id: XR_005638919.1


Basic Information

Item Value
RNA id XR_005638919.1
length 2589
RNA type transcript
GC content 0.46
exon number 14
gene id calcoco1b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14865059 ~ 14874459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATTTTACTTGGGGGGTCCACATGGTTCAGGAGAGGTTGTGAAACTCTTGCACCTGACAGGATTGCTCATTACTATCTTCAGATTGATCCACAGCTCTATCATTCATGAGGTGGCAGAAAAGACGTCACATTAATTTCTCAGCAGAATAAGCACAGCTTCCTATTACCATGGATAAACAGTCCACAGTGGTGTTTCGTAATGTGGGGCAATGGTACTTCCCCCAAACCAGAGTGGAGTGCCACTACAGTCTGACCTCCGACCATCAGTGGAGCAGCAGTGACTGGATAGGGATTTTTGAGATGGGCTGTTCTTCACTGAAACAGTTTTACACATATACATGGGCTCTTGTTCCTGAAGGCTACACTGAGGGTACCAGTGTCAGCTGCTGGGTACTTTTCCCAGCACACTACCTGCCCCGCCCCAGTGCTGTGGAGTATCAGTTTATATATGTGGATAAGATGGGAAAGGTGTGTGCTCGCAGTCGCCCCTTCACTTTCTGTACTCCCAAGCCGCTGGAGGAATTGGAGACCCTGAAAGAGGAACGAGAGGAGGACGACGGAGAGGAGGAGCTGCTCCTAGTCATCCCCAGGTCTCAGCTGCtgcagAGTCGGCTGGAGGAATGCTCAAAAAAACAAGCGGATATACAGCAGGCTCTGGACATGGCTAAAAAGGAGGCAGAGAATGAGAAAGAGAACAGCAAGAAAGCAAGGGAGAACTGGGAGCGCGAAAGGGAAGCAATGAAGGAGGAGATCTCAGAGCTTAGAGACAACTTGAGACACAACTGTGACATGTTGAAGAAGATCGATGGAAAACACAAGAATGTGAAATATAGTCAGGAAAACCTGACATCTGAACTGAGTAAACTCATGGCTGAAAATGCTGAGAGTCAGCAGCGAATCAAAGACCTGGAGGAGGAAATCAAGGGCCTGAATGAcagggagaaagaggaaaacGGGGAACTGGAAAGGCTGAAGGAGAGAGTGAAGAAAACGTCCAGTCAAATGAAACACGATGAGGAAAAGAGAAAGTGTCTGCAGGTGGAGAACGAGGCTGCTCTGGCGGAGGTGCGAGGGCTGCAGGAGCGTCTGGTGGCTAGTGAGCAAGTAGCCGAGAGCCTGCGTAGGGAGCTGAGAGAGCTGGGCACCCGTCAGGGCCATACCCACACCGAGCTGCATCAAGCCCGGCTGCAAGTAGCCCAGCTCACCCTGCTGCTCTCTGAAGAGAACTTGGTCCTCAGGGAGGAGCGTGCCAACTGGGTTCTAGAGAGAGAAGCTTACAAACATGCAGCAGAAaCGGATACAAAGAAATTACAAGAACTGAGCTGTGAGGTGCAGAGGAAGGAGGAGTGGCTACAGGAGGAGAGGGTGGAGAGGGAGAAACTAGAAGTAGAGCTTGGGCAAGAGAGAGATTCCAATCGAGTGCTGCTGAGTGATACTAAGCGAGAGCTGCAGGAGCTGAAGGCCAGCGTGAGGAAAGcccagaaagagagagaggagcagaagGTGGAAAAACAGGAACTGGTGAACTACATCCTTCAGTTAGAGCAGAGATTGAGGATggtgacagaaactaaatcAAATGGGATAATTCCAACATGCATCTCTCCTGGCTCTCCCtctgaagatgatgaagatgctTCTTCAGCTTCTCCCAGATCAATCTGTTCGCCTCTTTTCCTGTCCACTCACCTGGAACAGCCCAAAAGAGCTGAGCTCCTTGCTGCTGAGACACACGTCCACAGCAAAAAAGACACATCAGCGTCTGACACACAGGATTTGACAAGGAAGCACTGTGTGGAGTGTGGTGAAGGGAAGCAACTGGTCCTACTAGAACTCATCGACCCCATCCTGAGGTGACAATTCTGGCTTTCTACCAGCCACACAGTGACAGTACACACCCTGTTTCCCTCCTCCACCTCTCATAAAATAtgATCTGGCCGACTCCCCCATGTGGTAACAAAAAGAAAGATGGATGGAAAGTTGCTTGTTTACCACTGTGATGCAGGTTCATGTGGGTCATAAGAAACCTTTGGAATTATTCTGTTCTTGTTTTGTAGCTTTTCATGTATAAATCGGCCTTCACAAAGGTCAGATGTAGTGCAGAGCTTTTACCTCATGGGTGTCCATATTCAAAGACAACAGCACAATGTATAAGTCTTAAGTGTCCAGAATTATTTTATAAGTATGGCTAATGGTGTTATTACTGATTCAGGATTAATTAAACTCCTTTagaattaaacatgtttattttagaCTCCATTTGTAATCCCTAGATTTTCTAGCTTTTTTAGCTGATTACAACTATTTTGAGGAAAGCGTCATTGATGCCTTAATTAGCTttgattaaatacattttcttttggtGGCCTATCAGCCCGTAACCTCTGCATGTGAGTGTAAATCTTGAAACCGTGTCaaaagtgtgggtgtgtgtgtttacagacaAGTGTGAAATGTAGTGCTGCAGCTTGTTGAGCACAGTGTCAAGTTTGAAAAACATGAAAGTtaatttatgaatttttttgtttgttgatcTGAGCTTCTGTTGAAGAGATGGGGCTCTTCAATAAAATATGATGATAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51749 lncRNA upstream 952 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 7990 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 9052 14765297 ~ 14856007 (+) False znf740a
TU51699 lncRNA upstream 107701 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 150542 14712784 ~ 14714517 (+) True G38495
TU51770 lncRNA downstream 41219 14915678 ~ 14972297 (+) True G38538
TU51769 lncRNA downstream 95214 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 376110 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 522270 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 587842 15462301 ~ 15463452 (+) True G38762
XM_039796979.1 mRNA upstream 3283 14857461 ~ 14861776 (+) True smug1
XM_039796966.1 mRNA upstream 8277 14833361 ~ 14856782 (+) False znf740a
XM_039796972.1 mRNA upstream 8277 14833361 ~ 14856782 (+) False znf740a
XM_039796961.1 mRNA upstream 8277 14833361 ~ 14856782 (+) False znf740a
XM_039796967.1 mRNA upstream 8277 14833361 ~ 14856782 (+) False znf740a
XM_039796981.1 mRNA downstream 77863 14952322 ~ 14962342 (+) True LOC120556996
XM_039796983.1 mRNA downstream 91248 14965707 ~ 14969461 (+) False faim2b
XM_039796982.1 mRNA downstream 91249 14965708 ~ 14969461 (+) True faim2b
XM_039796560.1 mRNA downstream 145014 15019473 ~ 15118158 (+) True LOC120556827
XM_039796562.1 mRNA downstream 145014 15019473 ~ 15118158 (+) False LOC120556827
TU51738 other upstream 48623 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 527299 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 631534 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1336740 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1496770 13365554 ~ 13368289 (+) False mdm4
TU52135 other downstream 771052 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1090955 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1175446 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1558779 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1643077 16517536 ~ 16543580 (+) True G39116

Expression Profile