RNA id: XM_039796981.1


Basic Information

Item Value
RNA id XM_039796981.1
length 3348
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120556996
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14952322 ~ 14962342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGAGCgtgacatacagagagagacatccCTGATAGGCCTACATAACGAGAAACAGGCGGTTGACGGGACACACAAAAAGAacgcgaaaaaaaaaaactggtcacatttcTCAGGCACTTGAAAACGTGCGGGTTATTTTAGGACTCGTGTTGCTCATTGATGAGTGGGAGTGTTTAAACTACTTCTACTCCGGTCATGTTTTGATCGTGACTGTACATGGCAAGCAGCTGAACGCGTTGGGACCTCTGTAATTTAGAGAACCGCGCAACAGTGATATTATTTCTCAGCCTGGCATCATAAGGTGTGTAGACGGAGAGCCGAGCTGTCCTCCGTCACTTCACCTCGGAAATAATTTGGATCAATAGATCTGCTCTAATTTCCTTTGAAAAGATATTTCTTATACTTTTTCTTTGCTGTCCGGATTTTCTCAACAACCTCAATGCTCTGCGCACACTGCTGTTTGTCTGAGCTTGTGGATACATTCTTTATGCCTTGGCAGTTGTGGACTCTTTCAACGAAACTGATCGGTAGCGAGAAAAGGCAGTCAGTCCAGCATTAGACGCccacaaaataaactacacGGAACAACCGAACAACATCGACCTACTAGGAAACATGGAACACAGTCCTGGTGGTGGTGTTATCTTGTACGCTGGCTCGTCCGGCAGTGCCAGCCCGAGTCCTGGCAGCCCCTCAAGTGGATACCAGTCCCAGTCGCCCTCCTCCCACTCGCAGCCTTCATCCCCAGAGGGTGTCTTCTTTCAGGAGATTGGGCCCCTGAAGCAGAGAGAGGAACGGAGGGGCGGGACTCCTTCCCCGAAATTGGTCTTCCAGTTTCCTGAGGTGAACACTGCTCCTGTTGCCCAAATTACAACAGTATCATCGGCAACTTACAGCCATCCCACAGTGGCCAAAAGACCTTGTGGTTTCACTGGAACGTTCACTAAGACCGGAGGTATGGTACTTCTGTGTAAGGTGTGCGGGGACATTGCATCTGGGTTCCATTACGGTGTGCATGCCTGTGAAGGCTGCAAGGGTTTCTTCAGACGCAGCATTCAGCAGAATATCCACTACAAGATGTGTGTAAAGAATGAAAACTGTGTCATCATGCGCATGAACCGAAACCGGTGCCAGCACTGCCGCTTTAAGAAGTGTCTCTCCGTGGGCATGTCCAGAGATGCTGTGCGTTTTGGGCGTATTCCCAAACGGGAGAAGCAGAGACTACTGGATGAGATGCAGAGCTACATGAACAGTCTTAATGAATCGGCTTCCATGGAAATGGAGGTGTCCCCTCCTACCGATGCCCCCTGCAGTCCACAGAACCAGACGAATGAAGGTGCGGGCTCCATGTCGCAGTCTTACCGCAGCAACTTAATGAACAGAGATCAGAAACCACTCAAGATGGCTGCCGGCAACGGCAACATCGGAGCTTCCTCTTTCCAGAACAACTCAGTGCAGCAACCTTCCCTGTCGCACTCGGCAACCCAGACCCACCACACGGTTCACGGGGAGCAGGCGAGCTACCACGTCCCCACAAGCTGCCCGGTTTCCTCCACCAACAACGAAAACTCCACTGTCATCGATGACGCCAAGTACACCTTCTCTTCCAATCAGAATCAGTGCCCCGTCAGTGGCCGCCTATCCTCTAAATCCtactcagccaatcagaacagtTACCCAGCCAGTGATTCCCAGAACCAAAGTCCCTGCCCCTGGACGCTAAACGGAGGAGCCAAAGTGCTGGCATGTCCACTCAATTCCTGTCCAGTGGCTCCGGCCAGTCGCTCCAGTCAGGAGGTGTGGGAGTCTTTCTCCCAGTGCTTCACCCCTGCTGTTAAAGAAGTAGTGGAGTTTGCAAAGAGCATCCCGGGCTTCCAGTCTCTCAGCCAGCACGATCAGGTCATGCTGCTCAAGTCCGGCACTTTCCAGGTTCTCATGGTGAGATTCTGCTCACTGTTTGACCCCAAGGAAAGGACGGTGACCTTCCTCAATGGGCAGTCATATTCCCTGGCATCGCTTAGAGCTCTTGGCATGGGCTCCTTACTGGACGCCATGTTTGATTTCAGCGAGAAGCTCGGATATTTGGGTCTGGAGCCAGACGAGATGGCTCTATTCATGGCTGTCGTGCTGGTTTCTGCTGATCGCTCCGGTATAGTGGAGGTTGGAGCAGTGGAGCAACTGCAGGAGAATCTAATAAAAGCTCTGCGCTCTCTCATAACCAGTCGCCGCCCAGATGATAGCACCCTCTTCCCAAAGTTGCTTCTACGTCTGCCGGACCTGCGCACGCTGAACAACCACCACTCTGACAAGCTTTTAGCTTTCCGAATAGATCCTTGAGTTCGAAGAGCTAAAGCTTCCGGAGGTGCTTTGGGAAGCCTCCCTGCTCCCCATGCAAGCCTGGCCTGCCACACACAGTACGCTGGCCTCTGCATGATACTGTGGGAGCTGTGCCAAGTCTGATGCCATGAGAGAGCGAACTTGGGGAGAAAAAATATCAGTGAAGGATGTAGGCACAGCAGAAGGGTGGAGGCTCCTGAACTGAAACCTCTTCCAGTTCCAGgattgcttaaaaaaaacaaacaaaaaaacattaaaaacatagaTTGGGTTCTTCCATGGGTTCTTCGAGTCAACATCAAACCAAGTCATCACCTCTCCCTCGGGGAGTTTGTGCTGAAGaccaaaaagaagagagaactTGTTGTTTGTTCCTAGACTTTGTCCTCCAATCCCAGCTCACAGAGCTAACAAGAGGGAAGCATACTCTTGCCCAGAGAAAAAGGAACATGTACAAACATTCACCAACAATGATTtcttactgtacattcatgcTACAATGTGTAAAGGGCACTTTCCATACATTGACAAGACCTCTTAgataaatatataacatagcaATAGATATGTCTAATACACAGTTTTGGACAGTTTGTGTATGCGCTGTTTAAATTACATAAGCTATTTTCACAACATGTCACCATGTGAGAAATCTTTATGAAAATCACCCATTTGTGATTGAGAAATGTATAACATTTTTAAGAAATGAGAGTAATATGCATTGTATTTGTATGCGGTAATCAGGGCGAAACTATTGGTCATTTTAGACCGTGTCTGATGGGATGTATGTTAAGATGTTTTCTTGTAAATTTTGTATATAACCTTATTCTTGGTCCACATAGTTTGCAGATTATTGGATATGTAAATGAAGTTAGCATTGAATTATTGTATGTATATCACACATAATAGATTGCTTTACAGACTGCCAAGATAAAGCGGCACTTCAACTTGagtataaactttttatttgaagatatataattgaaataaatgtattgtCAACTGAC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51749 lncRNA upstream 88215 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 95253 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 96315 14765297 ~ 14856007 (+) False znf740a
TU51699 lncRNA upstream 194964 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 237805 14712784 ~ 14714517 (+) True G38495
TU51769 lncRNA downstream 7331 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 288227 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 434387 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 499959 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 579911 15542253 ~ 15543372 (+) True G38788
XM_039796975.1 mRNA upstream 77863 14865059 ~ 14874459 (+) False calcoco1b
XM_039796977.1 mRNA upstream 77863 14865059 ~ 14874459 (+) False calcoco1b
XM_039796978.1 mRNA upstream 77863 14865059 ~ 14874459 (+) False calcoco1b
XM_039796976.1 mRNA upstream 77863 14865059 ~ 14874459 (+) False calcoco1b
XM_039796979.1 mRNA upstream 90546 14857461 ~ 14861776 (+) True smug1
XM_039796983.1 mRNA downstream 3365 14965707 ~ 14969461 (+) False faim2b
XM_039796982.1 mRNA downstream 3366 14965708 ~ 14969461 (+) True faim2b
XM_039796560.1 mRNA downstream 57131 15019473 ~ 15118158 (+) True LOC120556827
XM_039796562.1 mRNA downstream 57131 15019473 ~ 15118158 (+) False LOC120556827
XM_039796561.1 mRNA downstream 57131 15019473 ~ 15118158 (+) False LOC120556827
XR_005638919.1 other upstream 77863 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 135886 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 614562 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 718797 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1424003 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 683169 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1003072 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1087563 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1470896 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1555194 16517536 ~ 16543580 (+) True G39116

Expression Profile