RNA id: XM_039796982.1


Basic Information

Item Value
RNA id XM_039796982.1
length 1096
RNA type mRNA
GC content 0.46
exon number 12
gene id faim2b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14965707 ~ 14969461 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCAGTGTAATCCGCACACTGGAGACACATTCAGAGCAACAACTATCCTACAAACAAACATCTTTTGCTTGTAACTTGCAGTGTTTTGGACCACATAAACCCCATTAAACGAGAGAAGAGGAGCTGagattgtttcatttttttggaTTTCAAAAACAAGAACAATATTTTACCTGTGACTTCAGAATAGTCTTCCTCATCATCAGCAAATCAAAGGTGCAAAAAGGGAACAAATCATGAAGAAGGGGAAGCAGGTGGGTGAGGACAATGAGCCCCCCAGTTATCAGGAGGTAACTGCAGGCTATGGGGAGATGGAGGCCCAGTTCGCCTGGGACGACAAGACCATCAGACGGACCTTCATCAGGAAGGTCTACGCCATTCTCATGGTCCAGCTGTTCGTGACAGTGGCAATTGTTGCTCTCTTCTCATTTTGCGCACCTGTGAGGTTTTATATCCAGACTCATCCAGGCTTGTACATGGCGTCTTATCTCATGTTCTTAGCCACCTACATCGCACTGTCCTGCTGTGGAGAGCTGAGGAGGCAGTTTCCTTGGAATATCATTTTGTTAGTTCTCTTTACTTTGAGCATGGCCTTCATGATGGGATTTGTGTCGAGcTTTTACAACACCAAATCAGTGGTTCTGTGTCTGGGAATCACATCTCTGGTGTGTCTTTCTGTCACCATCTTCAGCTTCCAGAGCAAGATTGACGTCACATCCTTTCAGGGCGTCCTGTTTTCTATGTGCATGGTCATGCTTCTCTGTGCCATCACCCTCTCCATTGTCGTCCCTTTTGGATACGTTCCCTGGTTACATGCCCTTTATGCGGTGGGAGGAGCCATTCTCTTCACTCTGTTCCTGGCATTTGACACCCAGATGCTGTTGGGGAACAAGCGCTACACCATAAGTCCAGAGGAATATATTTTTGCCACCCTCAGCCTCTACCTGGACATTATCTACCTGTTCAGCTTCCTGTTACAGATCATAGGAGGAGGCCGCGAGTAAAGCATTTCTCTGATACTGTACATCTGTCTCTCAGCACaactcttaaaggaacacggcgacttattgggaatttagcttattcaccgtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51749 lncRNA upstream 101601 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 108639 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 109701 14765297 ~ 14856007 (+) False znf740a
TU51699 lncRNA upstream 208350 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 251191 14712784 ~ 14714517 (+) True G38495
TU51769 lncRNA downstream 212 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 281108 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 427268 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 492840 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 572792 15542253 ~ 15543372 (+) True G38788
XM_039796981.1 mRNA upstream 3366 14952322 ~ 14962342 (+) True LOC120556996
XM_039796975.1 mRNA upstream 91249 14865059 ~ 14874459 (+) False calcoco1b
XM_039796560.1 mRNA downstream 50012 15019473 ~ 15118158 (+) True LOC120556827
XM_039796562.1 mRNA downstream 50012 15019473 ~ 15118158 (+) False LOC120556827
XM_039796561.1 mRNA downstream 50012 15019473 ~ 15118158 (+) False LOC120556827
XM_039796563.1 mRNA downstream 50012 15019473 ~ 15118158 (+) False LOC120556827
XM_039796383.1 mRNA downstream 188247 15157708 ~ 15159398 (+) False LOC120556705
XR_005638919.1 other upstream 91249 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 149272 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 627948 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 732183 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1437389 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 676050 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 995953 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1080444 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1463777 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1548075 16517536 ~ 16543580 (+) True G39116

Expression Profile