RNA id: XM_039797043.1


Basic Information

Item Value
RNA id XM_039797043.1
length 1809
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120557028
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38342443 ~ 38344251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAAAGAGGTGAGGTTTGGAGGCTCCTCAGACAAAATGCAGAGAGCATCAGAGCTCTGCGGGACTTCAACATGAGGACACACGAGTCCGCTATTGGCCCCGTCACTGTCAGACTGCAGCACTTCTCCCACATTTAGTTTGGAGGCTTATATCAGTGAAGAGACAACACAAAGTGGCATCCAGACTGCTCAGAGGAGACACCGACCGGGATGGGCTGagtctccacggttctcatgtTGTGTTTAAGTGCACCACCCTGGTGTGTACTTTCCATCagtccagtcagactctctgTGCAACCCCTCTGTGTTGTGTTGAGAAGAAACAGAATCTTGATTAGAAAAATGGCAGAAGTAGCTCCAGCCGCCTCGCCGGCCAAAGCAGCCAAGAAGAAGGTTTCCAAGCCGAAGAAGGCCGGCCCCAGCGTCAGCGAGCTCATCGTTCAGACTGTGGCCGCTTCCAAGGAGCGGAGCGGCGTGTCTGCGGCCGCCCTCAAGAAGGCTCTGGCTGCCGGAGGCTACGATGTGGACAAGAACAAGGCCCGTGTTAAGACCGCCATCAAGAGCCTGGTGGCGAAGGGGACTCTGGTCCAGACCAAGGGGACCGGAGCATCCGGTTCCTTCAAGATGAACAAGAAGGCTGTTGACACCAAGGCTAAGAAGCCGGTCAAGAAAGCCGCTCCTAAAGCCAAGAAGCCCGCAGCGGCCAAGAAGCCCAAAGCAGCGGCAGCTAAGAAGCCAGCAGCCGCGAAGAAGTCCCCGAAGAAGGCCAAGAAACCCGCAGCGGTCAAGAAAGCAGCCAAGAGCCCCAAAAAGGCCACAAAGAGCCCCAAAAAGGCGACCAAGAGCCCCAAGAAAGTGGTCAAAAAGGCCCCTGCAGCCAAGAAAGCCCCCGCTAAGAAGGCTGCCAAGCCCAAAGTGAAGAAGGCAGCACCCAAGAAGAAGTGAGCTGTAGTCAGTCTCATTAAGAAACGGCTCTTTAAGAGCCACCAAATCCTCCTCAaagagctttttcttttttaatcttatTCTGTAATTAACAAGAAACTTTGGGAGCACACTTAATTATATCAGGAGTAATCACTACAAGAAAGTAGTTTACCTTTTAAAACCAACTAGCTCCTAAATTTGTTCTTTTCATATAAATATCACAATTGCTTCAGAATCCCAGAGAAAGCAAAAGGTTTCACACATGACtataaaaataatcgttttaTTGAAATAACTGATAAACCAGTAAGGGAAAATAAaccttaatttaaaattaagaGAAAAACTTCATTATTTATACCAAAACAAGAACACTTTCACTTCTATCCAATGGAAGGAcgttactagaattgttggggctttgtaaagtatagtgtggtctagatctactctgtaaagtgtcttcagATAATGCTTATGATTTGATACACACATTGCTACAAATTTAAGAtaagatttttatttaaaaaagacaggATTATTTGTCATGgaaaattcaaaacattttagttttcattGTAGATTTGTGAGCAAATTTTATCAAATTAAACTGACCTATATTTAAGTGAAGGGGTCTCAACTTATATCATGGATCCGCTTAGTTTTAGGAAGAGTGGTTCTTTaatatggttaaaaaaaagaacaatgtgTGCTTAAATCATGCTATCTCATTTacattcccccctttttttacattatgtTTGGATAGTCATACACATCTCTTGTAGCCTATATCTCGTCCTGTTTCACTGTATGACTTTATGTTGAGCTGTTTCCATTTACTTTACGGTTAATCCTCAGTTACTAAAGATAGTCTCAA

Function

GO: NA

KEGG:

id description
K11275 H1_5; histone H1/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59473 lncRNA upstream 10393 38331380 ~ 38332050 (+) True G44387
XR_005638933.1 lncRNA upstream 94123 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 114093 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 114093 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 168336 38173602 ~ 38174107 (+) False LOC120557027
TU59488 lncRNA downstream 65751 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 66374 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 68576 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 111671 38455922 ~ 38456336 (+) True G44417
TU59506 lncRNA downstream 112430 38456681 ~ 38457162 (+) True G44419
XM_039797054.1 mRNA upstream 16453 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 29956 38311854 ~ 38312487 (+) True LOC120557035
XM_039797044.1 mRNA upstream 33459 38306826 ~ 38308984 (+) True LOC120557029
XM_039797065.1 mRNA upstream 38082 38303664 ~ 38304361 (+) True LOC120557049
XM_039797069.1 mRNA upstream 39669 38301095 ~ 38302774 (+) True LOC120557052
XM_039797053.1 mRNA downstream 2556 38346807 ~ 38347243 (+) True LOC120557037
XM_039798178.1 mRNA downstream 21808 38366059 ~ 38409274 (+) True LOC120557646
XM_039798639.1 mRNA downstream 389916 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA downstream 389940 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA downstream 402380 38746631 ~ 38784058 (+) True rbpjl
TU59402 other upstream 175225 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2379833 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2676402 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2856208 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2902304 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 268386 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 556321 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 608867 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1469709 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1811957 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile