RNA id: XM_039797044.1


Basic Information

Item Value
RNA id XM_039797044.1
length 2159
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC120557029
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38306826 ~ 38308984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACAGGGACCAGATCATATTACAAAAAGATTTTGATGCAAACTATAGCTGGTTGCAGTGATATCACGTAGTCAGGTTTGTGGACAGCAGAATTTGGAAATATGAACCTGTGTTTGGAGGCCCATCATGTCAAATCCATCATGTTAAGGATTAATGCCAGCCGAGAAACCTGTGTCAGGTAACCGCTTATAGCGTCACACCCAGCACCCAGTGTGTTTACCACCACTGAAAACTTCCCCaatttaaactaaataaaacacaataatgcAGTTATTTCACTTTCGTTATATCATAAAATGTCTCTGCTTACTTGAACACCACTGTCACATTTAACACACATTACTTTTAGATATTTTTAAAGACAAAACGTGAGGAAAACTCGCTGCGAGTAGTCCGAAATGACTGTGTATCCGAAAGGTTTGAAGCCTCCTGGAATCAAATTAACGAGTCCTCGTCGCCAAACATGAGCTCAGTTTGAAGGGGAGAAGGGTTTCTCACCACTAAAATaacaattttgttttaaaacgtTTATCTTCTATGAATTTTATCCTCAAATTGtggaagagaaaacacaaagtgtcgccacattttcagcaggtcagcggagcggctgtggattgactctccacggttctcatgaGCTTTATAAGTCCCGCCTCCTCTCCGAGCAGGAACAGCAGACTGTAACgcgacagagaaagacacagacatGGCAGAAGAAGcaccagcagctccagcagttCCCGCGGCGAAAGCCCCGGCCAAAGCTCCCAAGAAGAAGGCAGCTCCCCGGGCAAAGAGTGACGGACCCTCCCTTCCGAAGCTCATCCTCGACGCCGTGACAGAATCCAAGGACCGTAAAGGCACCTCGCTTCCAGCTATCAAGAAGACGTTAGCCACCAAAGGCATCGACCTGGAGAAGTCCAACAAACGCATCAACACCGCGGTGAAGAAGCTGGTGACCGACGGAAAGCTGGTCCAGAATAAAGGGATTGGGGCTTCCGGATCCTTCAAGCTCCCCAAGGCTGCGCCTAAAGCTGCCAAATCAGGCAAGAAAGCTCCCGTTAAGGTGAAGAAACCCGCTGCCAAGTCCCCGCAGAAGAAAACCGCCGCCAAGAAAACCGCAGTGAAGAAGACCGCAGCCAAGAAAACCGCCGTTAAGAAACCAGCAGCCAAGAAACCAGCGGCCAAGAAGTCTCCTGTGAAGAAAGCTGCTAAGAAGCCAGCAGTGAAATCTACTCCCAAGAAGGCTGCCCCTAAAAAGGTcgcaaagaagaagactcctgtgaAGAAAGCTCCGGCAAAGAAAGCTGCAGCGAAGAAGTCCAAGAAGTAAAGTGGCTCTTTAACCTGCACTCAGTGCACCAAAaggctcttttaagagccaccACACATTCACAAGAGAGCTGTTTTCCTACCACATTCCCATGTCTGtttccattgtttttttccatCATTTGTTATATCGAAGCACTTTGATCGATATGGAATGTGCTGGTGAAGAGTAATTTAATGTTTACTGTTAGTGTGCCACATttaaaaggggaaaaaacaagTGAGTAACGTTACCTCCTCTTACATTTCATGAATCTACCTCTAAATCTCGTTTAGCTGGAAGGATAGGCCCTTAAGATGGAGCATTACATTTTCAATGGGGGTcctataaatacaaaataattaaaCCTACAAATCGAACAGTGTTACAAGTTAAAACCGCTTGCTCATAAACTACCCAGCTGTTTCAAAAGAATTAGACACAGCAACACAAATAATTAATCAATGAATCACCAAAAGAGCAATTGCAGCCGTTAGTCTTCAGCACAAACTATACATTAAAAGCATGGGGTTGTTTTAAGATGAGAAAATAAAGATGTCCAGAAGCAGTGGTCTTAAGTAGATCTCAGAGAAAAGGAAAGATCATTCCAATAGGAAAGAGCTTATTTGAATGATCTGCATCCAACTTCTTTGAAAATTGGAGGGACAAAGAAACATGGATGTTGCAGATATGAAGATCTACATGGaaaccaaaaaagaaagaacaattgaaaatgaaataaatgaagaTGAACTGAATAGGTGAAGTTGACTCAGGCTGTGGCCAGTTAATTTATTCAAACAAAAGACAATATAATAAACCTTTAAGTCCATCTATATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638933.1 lncRNA upstream 58506 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 78476 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 78476 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 132719 38173602 ~ 38174107 (+) False LOC120557027
TU59401 lncRNA upstream 146132 38159937 ~ 38160694 (+) True G44325
TU59473 lncRNA downstream 22396 38331380 ~ 38332050 (+) True G44387
TU59488 lncRNA downstream 101018 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 101641 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 103843 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 146938 38455922 ~ 38456336 (+) True G44417
XM_039797065.1 mRNA upstream 2465 38303664 ~ 38304361 (+) True LOC120557049
XM_039797069.1 mRNA upstream 4052 38301095 ~ 38302774 (+) True LOC120557052
XM_039797050.1 mRNA upstream 21214 38282988 ~ 38285612 (+) True LOC120557034
XM_039797066.1 mRNA upstream 47670 38258538 ~ 38259156 (+) True LOC120557050
XM_039797060.1 mRNA upstream 49351 38257053 ~ 38257475 (+) True LOC120557043
XM_039797051.1 mRNA downstream 2870 38311854 ~ 38312487 (+) True LOC120557035
XM_039797054.1 mRNA downstream 16559 38325543 ~ 38325990 (+) True LOC120557038
XM_039797043.1 mRNA downstream 33459 38342443 ~ 38344251 (+) True LOC120557028
XM_039797053.1 mRNA downstream 37823 38346807 ~ 38347243 (+) True LOC120557037
XM_039798178.1 mRNA downstream 57075 38366059 ~ 38409274 (+) True LOC120557646
TU59402 other upstream 139608 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2344216 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2640785 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2820591 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2866687 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 303653 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 591588 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 644134 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1504976 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1847224 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile