RNA id: XM_039797045.1


Basic Information

Item Value
RNA id XM_039797045.1
length 1480
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC120557030
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38237678 ~ 38239157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAAAACagtcataatataataaaaatgcaAGGAAATGTGGGATTCCAAATAATTGTGACCTGATCAGATCATGTTACAGAAAGATTTTGAAGCAAACTGAAGCTGGTTGCAGTGATAGACACAGAGTCAGGGTTGTGTACAGTAGAAGAGAGAAATATGAACCTGTGTTATGAGGCCCATCATGTCAGATCCATCATGTTAAGGATCAATGCCAGCCGAGAAACCTGTTTCAGGTAACCGCCTATAGCTTCACGCCCAGCACCCAATGTGTTTACCACCACTGAAAACTTCCCCaatttaaactaaataaaacacaataatgcAGTGATTTCACTTTAATTCTCTCCTCACATGTCTCTGCTTACTTGAAAACCACTGTCACATTTAATACACATTACTTTTAGGTATTTTTAAAGACAAAATGTGAGGAAAACTCGCTGCGAGTAGTCCAAAATGACAGTGTATCTGAAAGGTTTGAAGCCTCCTGGAATCAAATTAACGAGTCCTCGTCGCCAAACATGAGCTCAGTTTGAAGGGGAGAAGGTTTGCTCACCACTAAAATaacaattttgttttaaaacgtTTATCTTCTATGCATTTTATCCTCAAATTGtggaagagaaaacacaaagtgtcgccacattttcagcaggtcagcggagcggctgtggattgactctccacggttctcatgaGCTTTATAAGTCCCGCCTCCTCTCCGAGCAGGAACAGCAGACTGTAACGCGACAGAGAAAGATACAGACATGGCAGAAGAAGcaccagcagctccagcagttCCCGCGGCGAAAGCCCCGGCCAAAGCTTCCAAGAAGAAGGCAGCTCCCCGCGCAAAGAGTGACGGGCCCTCCCTCCCGAAGCTCATCCTCGACGCCGTGACTGAGTCCAAGGACCGTAAAGGCACCTCGCTTCCGGCTATCAAGAAGACGTTGGCCACCAAAGGCATCGACCTGGAGAAGTCCAACAAACGCATCAACACCGCGGTGAAGAAGCTGGTGACCGACGGAAAGCTGGTCCAGAATAAAGGGATTGGGGCTTCGGGATCCTTCAAGCTCCCCAAGGCTGCGCCTAAAGCTGCCAAATCAGGCAAGAAAGCTCCCGTTAAGGTGAAGAAACCCGCTGCCAAGTCCCCGCAGAAGAAAACCGCCGCCAAGAAGACCGCAGTGAAGAAGACCGCAGCCAAGAAAACTGCCGCTAAGAAACCAGCAGCCAAGAAACCAGCGGCCAAGAAGTCTCCTGTGAAGAAAGCTGCCAACAAGCCAGCAGTGAAATCTACTCCCAAGAAGGCTGCCCCTAAAAAGGTCGCAAAGAAGAAGACCCCTGTGAAGAAAGCTCCGGCAAAGAAAGCTGCAGCGAAGAAGTCCAAGAAGTAAAGTGGCTCTTTAACCTGCACTCAGTGCACCAAAaggctcttttaagagccaccACACATTCACAAGAGAGCTGTTTTCCTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638935.1 lncRNA upstream 9328 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 9328 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 63571 38173602 ~ 38174107 (+) False LOC120557027
TU59401 lncRNA upstream 76984 38159937 ~ 38160694 (+) True G44325
TU59333 lncRNA upstream 141606 38082641 ~ 38096072 (+) False plekha6
XR_005638933.1 lncRNA downstream 8146 38247303 ~ 38248320 (+) True LOC120557055
TU59473 lncRNA downstream 92223 38331380 ~ 38332050 (+) True G44387
TU59488 lncRNA downstream 170845 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 171468 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 173670 38412827 ~ 38413939 (+) True G44401
XM_039797064.1 mRNA upstream 1448 38235563 ~ 38236230 (+) True LOC120557047
XM_039797040.1 mRNA upstream 63184 38166182 ~ 38174494 (+) True LOC120557027
XM_039797042.1 mRNA upstream 63184 38166182 ~ 38174494 (+) False LOC120557027
XM_039797055.1 mRNA upstream 87297 38149971 ~ 38150381 (+) True LOC120557039
XM_039797067.1 mRNA upstream 90616 38146740 ~ 38147062 (+) True LOC120557051
XM_039797052.1 mRNA downstream 1525 38240682 ~ 38241142 (+) True LOC120557036
XM_039797060.1 mRNA downstream 17896 38257053 ~ 38257475 (+) True LOC120557043
XM_039797066.1 mRNA downstream 19381 38258538 ~ 38259156 (+) True LOC120557050
XM_039797050.1 mRNA downstream 43831 38282988 ~ 38285612 (+) True LOC120557034
XM_039797069.1 mRNA downstream 61938 38301095 ~ 38302774 (+) True LOC120557052
TU59402 other upstream 70460 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2275068 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2571637 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2751443 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2797539 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 373480 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 661415 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 713961 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1574803 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1917051 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile