RNA id: XM_039797051.1


Basic Information

Item Value
RNA id XM_039797051.1
length 634
RNA type mRNA
GC content 0.54
exon number 1
gene id LOC120557035
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38311854 ~ 38312487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTTCACTCCGAGCACTATTCCTTCTTGAACTGTGAGCACAGAGAAGACTGCGAAACAGAAATGGCAAGAACCAAGCAGACCGCTCGTAAATCTACCGGAGGTAAAGCCCCCAGGAAGCAGCTGGCCACCAAGGCTGCCCGTAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGTACCGTGGCTCTGAGAGAGATCCGTCGCTACCAGAAATCTACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGAGAAATCGCTCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCCGCCGTCATGGCTCTGCAGGAGGCCAGCGAGGCTTACCTGGTCGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGAGGGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGTATCCGCGGAGAGAGGGCTTAAACTCACAACAGATCGTCCTACAGTCCCACAacggctcttttaagagccacaTACAAACACTAACTGAGCAACAGTCCCGAAACAATATTGTGACAATGTTATGTACTATTATAAACTTATGCACTTAAGTAGTGCAGACAGAAACTTACAATAAATGTCT

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007596 blood coagulation biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11253 H3; histone H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638933.1 lncRNA upstream 63534 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 83504 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 83504 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 137747 38173602 ~ 38174107 (+) False LOC120557027
TU59401 lncRNA upstream 151160 38159937 ~ 38160694 (+) True G44325
TU59473 lncRNA downstream 18893 38331380 ~ 38332050 (+) True G44387
TU59488 lncRNA downstream 97515 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 98138 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 100340 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 143435 38455922 ~ 38456336 (+) True G44417
XM_039797044.1 mRNA upstream 2870 38306826 ~ 38308984 (+) True LOC120557029
XM_039797065.1 mRNA upstream 7493 38303664 ~ 38304361 (+) True LOC120557049
XM_039797069.1 mRNA upstream 9080 38301095 ~ 38302774 (+) True LOC120557052
XM_039797050.1 mRNA upstream 26242 38282988 ~ 38285612 (+) True LOC120557034
XM_039797066.1 mRNA upstream 52698 38258538 ~ 38259156 (+) True LOC120557050
XM_039797054.1 mRNA downstream 13056 38325543 ~ 38325990 (+) True LOC120557038
XM_039797043.1 mRNA downstream 29956 38342443 ~ 38344251 (+) True LOC120557028
XM_039797053.1 mRNA downstream 34320 38346807 ~ 38347243 (+) True LOC120557037
XM_039798178.1 mRNA downstream 53572 38366059 ~ 38409274 (+) True LOC120557646
XM_039798639.1 mRNA downstream 421680 38734167 ~ 38784058 (+) False rbpjl
TU59402 other upstream 144636 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2349244 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2645813 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2825619 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2871715 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 300150 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 588085 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 640631 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1501473 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1843721 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile