RNA id: XM_039797056.1


Basic Information

Item Value
RNA id XM_039797056.1
length 676
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC120557040
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38141593 ~ 38142268 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCCCTCTGCGGCTCTGCTGGAAGCCTCTTTTCTGGTTGGTCTGGCTGGAAATGATCAGCTCCCGCGCTCCGCGGAGATAAAAGGAGGGTTTCAGCTGTTGGGAAAACATTTCTCTGAGTCGTGACTTTAGAAAACATCTGAAAATGAGTGGCCGAGGGAAAACCGGAGGAAAAGCCAGAGCTAAGGCAAAGACCCGCTCCTCCCGTGCAGGGCTCCAGTTCCCAGTCGGCCGTGTCCACAGGCTGCTCCGTAAAGGAAACTACGCTCAGCGTGTGGGAGCCGGCGCCCCCGTCTACCTGGCGGCTGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGTCACCTGCAGCTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACCGAGAAGCCCGCCAAGAAATAGATACCCGGAACCGGCTTTTACCGACCAAACAacggctcttttaagagccacacACTTCTAACTAAAGAGAGAGCTCCTTACTGTGTCTGTCTAGTGTTCATATTGTGAGAGTTTTAAATTATCTTCATTGTACCAACAATTTCAGCA

Function

GO: NA

KEGG:

id description
K11251 H2A; histone H2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59333 lncRNA upstream 45521 38082641 ~ 38096072 (+) False plekha6
TU59326 lncRNA upstream 191816 37949515 ~ 37949777 (+) True G44265
XR_005638909.1 lncRNA upstream 308974 37764777 ~ 37832619 (+) True LOC120556894
TU59308 lncRNA upstream 390281 37751067 ~ 37751312 (+) True G44247
TU59290 lncRNA upstream 839077 37302224 ~ 37302516 (+) True G44232
TU59401 lncRNA downstream 17669 38159937 ~ 38160694 (+) True G44325
TU59403 lncRNA downstream 31334 38173602 ~ 38174107 (+) False LOC120557027
XR_005638935.1 lncRNA downstream 85311 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA downstream 85314 38227582 ~ 38228350 (+) False LOC120557056
XR_005638933.1 lncRNA downstream 105035 38247303 ~ 38248320 (+) True LOC120557055
XM_039796515.1 mRNA upstream 37647 38097298 ~ 38103946 (+) True golt1a
XM_039796347.1 mRNA upstream 45567 38010626 ~ 38096026 (+) False plekha6
XM_039797067.1 mRNA downstream 4472 38146740 ~ 38147062 (+) True LOC120557051
XM_039797055.1 mRNA downstream 7703 38149971 ~ 38150381 (+) True LOC120557039
XM_039797040.1 mRNA downstream 23914 38166182 ~ 38174494 (+) True LOC120557027
XM_039797042.1 mRNA downstream 23914 38166182 ~ 38174494 (+) False LOC120557027
XM_039797064.1 mRNA downstream 93295 38235563 ~ 38236230 (+) True LOC120557047
unassigned_transcript_220 other upstream 2178983 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2475552 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2655358 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2701454 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 3474411 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 23914 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 470369 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 758304 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 810850 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1671692 39813960 ~ 39821908 (+) False G44581

Expression Profile