RNA id: XM_039797060.1


Basic Information

Item Value
RNA id XM_039797060.1
length 423
RNA type mRNA
GC content 0.61
exon number 1
gene id LOC120557043
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38257053 ~ 38257475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCATCTGAAAATGAGTGGACGAGGGAAAACCGGAGGAAAAGCCAGAGCTAAGGCAAAGACCCGCTCCTCCCGTGCCGGGCTCCAGTTCCCAGTCGGCCGTGTCCACAGGCTGCTCCGTAAAGGAAACTACGCTCAGCGTGTGGGAGCCGGCGCCCCCGTCTACCTGGCGGCTGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGTCACCTGCAGCTGGCTGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACAGAGAAGCCCGCCAAGAAGTAAAACTGGAGACTCTCTGACTGCTGGAA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638933.1 lncRNA upstream 8733 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 28703 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 28703 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 82946 38173602 ~ 38174107 (+) False LOC120557027
TU59401 lncRNA upstream 96359 38159937 ~ 38160694 (+) True G44325
TU59473 lncRNA downstream 73905 38331380 ~ 38332050 (+) True G44387
TU59488 lncRNA downstream 152527 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 153150 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 155352 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 198447 38455922 ~ 38456336 (+) True G44417
XM_039797052.1 mRNA upstream 15911 38240682 ~ 38241142 (+) True LOC120557036
XM_039797045.1 mRNA upstream 17896 38237678 ~ 38239157 (+) True LOC120557030
XM_039797064.1 mRNA upstream 20823 38235563 ~ 38236230 (+) True LOC120557047
XM_039797040.1 mRNA upstream 82559 38166182 ~ 38174494 (+) True LOC120557027
XM_039797042.1 mRNA upstream 82559 38166182 ~ 38174494 (+) False LOC120557027
XM_039797066.1 mRNA downstream 1063 38258538 ~ 38259156 (+) True LOC120557050
XM_039797050.1 mRNA downstream 25513 38282988 ~ 38285612 (+) True LOC120557034
XM_039797069.1 mRNA downstream 43620 38301095 ~ 38302774 (+) True LOC120557052
XM_039797065.1 mRNA downstream 46189 38303664 ~ 38304361 (+) True LOC120557049
XM_039797044.1 mRNA downstream 49351 38306826 ~ 38308984 (+) True LOC120557029
TU59402 other upstream 89835 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2294443 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2591012 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2770818 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2816914 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 355162 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 643097 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 695643 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1556485 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1898733 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile