RNA id: XM_039797064.1


Basic Information

Item Value
RNA id XM_039797064.1
length 668
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC120557047
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38235563 ~ 38236230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTAGGAACTCCAATCCGAAGCAAAGATGCCAGCAGAAGCCACCGTGAAAGCGCCCAAGAAGGGCTCCAAGAAAGCCGTGACTAAGACCGCCGCCAAGAGCGgcaagaagaggagaaagagcaggaaggagagctacGCCATCTACGTCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGTATCTCCTCCAAGGCCATGGGCATCATGAACTCTTTTGTGAGTGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGTCTGGCCCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCCGTGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAACCATCCCGCTGCTGTAATCTACTAAACCAacggctcttttaagagccaccCACTTCTTCTTAGAGAGCAGAGTTTCATTCAGTTATGGGTTTAGATACAAATACTTTAACCAGTTTTCTATGCTTTGTCCTCCACGTACATTTTGCATTGTATAACTTATTTGTTTTATAAGTTTCCTTTATACTTGTTGAACCTGACTTATTCTACTGTGGGTCAGAGGGAACATTATCAATTTctgtctggcacatattgctGAATTAA

Function

GO: NA

KEGG:

id description
K11252 H2B; histone H2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638935.1 lncRNA upstream 7213 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 7213 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 61456 38173602 ~ 38174107 (+) False LOC120557027
TU59401 lncRNA upstream 74869 38159937 ~ 38160694 (+) True G44325
TU59333 lncRNA upstream 139491 38082641 ~ 38096072 (+) False plekha6
XR_005638933.1 lncRNA downstream 11073 38247303 ~ 38248320 (+) True LOC120557055
TU59473 lncRNA downstream 95150 38331380 ~ 38332050 (+) True G44387
TU59488 lncRNA downstream 173772 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA downstream 174395 38410625 ~ 38412477 (+) False G44402
TU59487 lncRNA downstream 176597 38412827 ~ 38413939 (+) True G44401
XM_039797040.1 mRNA upstream 61069 38166182 ~ 38174494 (+) True LOC120557027
XM_039797042.1 mRNA upstream 61069 38166182 ~ 38174494 (+) False LOC120557027
XM_039797055.1 mRNA upstream 85182 38149971 ~ 38150381 (+) True LOC120557039
XM_039797067.1 mRNA upstream 88501 38146740 ~ 38147062 (+) True LOC120557051
XM_039797056.1 mRNA upstream 93295 38141593 ~ 38142268 (+) True LOC120557040
XM_039797045.1 mRNA downstream 1448 38237678 ~ 38239157 (+) True LOC120557030
XM_039797052.1 mRNA downstream 4452 38240682 ~ 38241142 (+) True LOC120557036
XM_039797060.1 mRNA downstream 20823 38257053 ~ 38257475 (+) True LOC120557043
XM_039797066.1 mRNA downstream 22308 38258538 ~ 38259156 (+) True LOC120557050
XM_039797050.1 mRNA downstream 46758 38282988 ~ 38285612 (+) True LOC120557034
TU59402 other upstream 68345 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2272953 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2569522 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2749328 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2795424 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 376407 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 664342 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 716888 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1577730 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1919978 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile