RNA id: XM_039797073.1


Basic Information

Item Value
RNA id XM_039797073.1
length 1759
RNA type mRNA
GC content 0.46
exon number 6
gene id ctsz
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14452194 ~ 14455976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTCATATGACTGAGGTCTCAGTACCGGTTTATCAGCGCTGTTTACCCGCAGACACGCGGCAGTTTTTCGGCTGTACCTGATAACGCCACCAGCCTCCTGAGCCTGCTCGGTGTGTTAAAGATGGCTGGGACAGTTTCAGTCGTCCTGTTTTCAGTCCTGCTCTCCGGTGTGAGCGCCGGAGTGTTTTTCAACCAGAAGCAGCCGTGCTATGTCCGCACACCGAGGAGAAACGACTTTGGACTGAAGACCGCTCCTCGTCCTCATGagtatttaaacatttctgaaCTGCCCAAATCATGGGACTGGAGGAACATCAATGGCACCAACTTTGTGAGCACGACCCGCAACCAGCACATTCCCCAGTACTGTGGCTCCTGCTGGGCCCATGGCAGCACCAGCGCCATGGCAGATCGTATCAACATTAAGAGGAACGGAGCGTGGCCATCTGCCTATCTCTCTGTCCAGAATGTGATCGACTGTGGCGATGCCGGCAGTTGCCATGGAGGAGATCACACTGGCGTTTGGGAGTACGCTAACAAACACGGGATCCCAGATGAGACGTGCAACAACTACCAGGCTAAAGACCAGAAGTGCAAACCCTTCAACGAATGCGGCACCTGCACCACCTTTGGAGTGTGCAATATTGTGAAGAACTACACCCTGTGGAAAGTGGACGATTACGGAGCTGTCAGCGGGAGGGAGAAGATGATGGCAGAGATCTACGCTAAAGGGCCGATCAGctGTGGGATTATGGCCACAGACAAGCTGGATGCCTACACCGGAGGTCTCTACTCTGAATATCAGGAGGATGCTTTCATCAACCACATCGTGTCAGTGGCAGGATGGGGAGTGGAGGACGGTGTTGAATACTGGATTGTACGCAACTCCTGGGGAGAGCCATGGGGTGAGAAGGGCTGGCTCAGGATCGTGACCAGTGCTTACAAGGGAGGAAGTGGAAGCAAATACAACCTGGCTTTGGAGGAGGACTGCATGTACGGAGACCCAGTTGTCCCCAAAGCCTACCTGTAGAGGAGACCAGCACCCACAGTGTCAGAGGTCGTCACTGTACGCCCACTTAGGTCTTCCTGTCTCGGGCAGAGGGaaactttttatttgtaaaatattGAAAAGGGAATAATTTCAGATTTTCTTAGATctattttttacacttttaatcACGGTGTCAAACTCTCAATGCCAATGTCTGGATATCAGACCTGCTTGAATCAATGCAGagtatctgatttttttttaatcacagtgAAAAGGCTGTTTTAACGGTCTGAAATGTATAAATTGAGTGGGAGGAGAGAAACACATCAGTACAACTACTTTCTACAAAATTCAAGCATTGCACGCTGAATAGCCACTATAAACACTGAAAAGATGCAACCAATTCTTCAGTTTACATTATCAAGAGGACATTGACAGCTTTCTTAGTTTTAGATTTCATGCATTTCCATGCAAACTGACTCAGCCAAAGAACACAGTGCTTATATGTCCTGAAATGCTCCGACactgaatgtttttattgtgtggTGTTAATGTACTGACAACATTAACTACACCCTGATAGAAAAACGGAAACTAAAATCTACTTTTAAAGTGTGCCTTACATGCACTGGCAGTCAATAGatttatgtaattttatttttgttttgttttttatgcttGGCAATGTACACATCAGAAATTCTGGAAAAATTGcaattttgttgttttaaactgtGCCAATAAACACACCACCTAAAAGTGAT

Function

GO: NA

KEGG:

id description
K08568 CTSZ; cathepsin X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51375 lncRNA upstream 143753 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 158037 14293933 ~ 14294157 (+) True G38274
TU51342 lncRNA upstream 256777 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 406635 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 449007 14002962 ~ 14003187 (+) True G38164
TU51433 lncRNA downstream 8998 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 36927 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 151863 14607839 ~ 14610422 (+) True G38441
TU51621 lncRNA downstream 186956 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA downstream 233024 14689000 ~ 14690625 (+) True G38449
XM_039798670.1 mRNA upstream 8389 14435641 ~ 14443805 (+) True npepl1
XM_039798651.1 mRNA upstream 17172 14416436 ~ 14435022 (+) False ankrd52b
XM_039798650.1 mRNA upstream 17172 14417089 ~ 14435022 (+) True ankrd52b
XM_039798649.1 mRNA upstream 106589 14339648 ~ 14345605 (+) False si:ch211-159e12.5
XM_039797291.1 mRNA downstream 118157 14574133 ~ 14583735 (+) False si:ch1073-456m8.1
XM_039797290.1 mRNA downstream 118158 14574134 ~ 14583735 (+) True si:ch1073-456m8.1
XM_039799040.1 mRNA downstream 143047 14599023 ~ 14602910 (+) True olfml3b
XM_039799128.1 mRNA downstream 163541 14619517 ~ 14626326 (+) True pmela
XM_039799140.1 mRNA downstream 175902 14631878 ~ 14637440 (+) True prph
TU51384 other upstream 114434 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 218669 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 923875 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1083905 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1165883 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 352376 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 409083 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1189535 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1509438 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1593929 16049905 ~ 16050430 (+) False eefsec

Expression Profile