RNA id: XM_039797149.1


Basic Information

Item Value
RNA id XM_039797149.1
length 1029
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC120557116
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38941572 ~ 38942817 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGAGCTTTCCTGAAGAGTTTACACTAATCAAGTCAGGAAAGACCATCCCGACAAGCAGCAGATTGCTTACCCTTGCTCCCGAATACGATGAGTCTTCTGACCTGATCCGAGTTGGAGGAAGTGGAGAGGCCAACCAGTGGTCCCGAGAATGGCAGATTCGACCTGCCTTCTTTTCAACAGGGGTGGATTGCTTCGGCCCTATGCTCATCAAAATAGGCAGACGAACTGAAAAAAGATGTGGCATCCTGTACAAGTGTCTTACCACAAGGGCAGTCCACCTCGACTTGCTGGCGAATATGGACTCTAATTCCTTTCTAATGTCCCTCAGACGCTTCATAGCTCGTAGGGGAAAGCCCTTCAAGCTTTTATCCGATCAAGGCACCAACTTCAAAGGAGGAAGTAGGGAGCTGCATGAAGCATTCAATACCCTGGAGCCTGCCCTCAGAGATCTGCTAGCAGCAGAACAGATCCGCTTCCGCTTCAATCCACCCGGAGCTCCCCACTTTGGTGGGTCGTGGGAAAGAGAGGTGCGATCTGTGAAGACAGCCCTCCGAACCACACTAGGAGCTCAGACTGTGCCCGAGGAAGTGTTGATGACTGTCTTGATTGAGGTGGAGAGCATCCTCAACTCTAGGCCCCTGGGCTATGTCTCCACGGACATTGCAGACCCGGATCCTGTTACACCCAACTTCTTGTTGATGGGGCGGCCGGACTCCTCCCTGCCACAAGTCGTCTACCCAGAGACAGAACTGCTTAGTCGCAAAAGGTGGAGACATACTCAAGTCCTGGCTGATCATTTCTGGAGGCACTTCATACAGCATTTCTTGCCTACCTTGCAAGCACGACAGAAATGGAATATTGATGAAGAGGACATCACCATTGGGACGGTAGTTCTCATTGTAGATCAGCAGGCTCCAAGGGCTCTGTGGCAGGTAGGAACCGTGAAGACTGTCATACCTGGAGTAGACGGCCGTTGGACTGCGTTCAATAATTTAATTATACTAAACTCCTGCTTTCCCCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59589 lncRNA upstream 100339 38841034 ~ 38841233 (+) True G44489
TU59588 lncRNA upstream 116553 38824675 ~ 38825019 (+) True G44488
XR_005638998.1 lncRNA upstream 128128 38806446 ~ 38813444 (+) True LOC120557691
TU59576 lncRNA upstream 128942 38806469 ~ 38812630 (+) False LOC120557691
TU59542 lncRNA upstream 227749 38709982 ~ 38713823 (+) True G44454
TU59600 lncRNA downstream 45251 38988068 ~ 38988533 (+) True G44499
XR_005639003.1 lncRNA downstream 157168 39099985 ~ 39100496 (+) True LOC120557696
XR_005639001.1 lncRNA downstream 260852 39203669 ~ 39205218 (+) True LOC120557694
TU59633 lncRNA downstream 556282 39499099 ~ 39865513 (+) True G44527
XR_005639000.1 lncRNA downstream 665904 39608721 ~ 39610204 (+) True LOC120557693
XM_039798228.1 mRNA upstream 28042 38897360 ~ 38913530 (+) False LOC120557676
XM_039798226.1 mRNA upstream 28042 38897361 ~ 38913530 (+) True LOC120557676
XM_039798213.1 mRNA upstream 38516 38900572 ~ 38903056 (+) False LOC120557667
XM_039798209.1 mRNA upstream 55144 38857167 ~ 38886428 (+) True LOC120557663
XM_039798639.1 mRNA upstream 157514 38734167 ~ 38784058 (+) False rbpjl
XM_039798231.1 mRNA downstream 2590 38945407 ~ 38947850 (+) True LOC120557678
XM_039798217.1 mRNA downstream 10301 38953118 ~ 38980113 (+) False LOC120557670
XM_039798216.1 mRNA downstream 10301 38953118 ~ 38980112 (+) False LOC120557670
XM_039798239.1 mRNA downstream 179971 39122788 ~ 39142350 (+) True LOC120557683
XM_039798211.1 mRNA downstream 306349 39249166 ~ 39276979 (+) True LOC120557665
XR_005638991.1 other upstream 38516 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 328601 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 774354 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2978962 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 3275531 35664143 ~ 35666041 (+) True G43924
XR_005638992.1 other downstream 10301 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 871143 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1213391 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1537859 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 1561535 40504352 ~ 40506056 (+) False LOC120557692

Expression Profile