RNA id: XM_039797157.1


Basic Information

Item Value
RNA id XM_039797157.1
length 3343
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120557124
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39791011 ~ 40446646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCCGATGACAACGGAGGCGGCCTGTGGAGACATCGACAGCGATGgagcttcttcctcttctgtctCTGCCTCCTGACTCGCTCTGAAATCACGTCTGCTCGACAAAACGGAGCAGCTCCAGAGCCATCTGTCAAGATACTTAATAATCCAACAAACAACTCAGCGCTGCTGCAGTGTGAGGTTCGAGATGCTTCTCCAGCCATTAAAGTAGAGCTGCAGGACAGTGCTGGAAACACACTTCCTGCTGAGGGGCCCCAGGTCTCAGAAAGAGGAGACAGATACTACATCACCCTCCAAACTACTGTGTTCAAGACCGACAACTTCAGCTGTGTCGTCACACAGGAGGAAACCAACCAACAGATTTATGCTCAGACCTTTGTGCATATCAGTGGGGCAGCTTCAGCGGCAGACTCCTCCTCCGAAGACTCAGAAGGACAAATGAGTCTACGAAAGGGTCTAAGCGGGAGTTCTTTTGGAAGGCCAGGTGACGGAGAAGTGCCAACCTCAGAGTCTCCCCATGGATGGCTTGTTGCTGCAATTCTTCTCCCAgtttttcttgttcttcttctagCTGTGCTTGTATACAAGTGTTGCACcctaaaatgtacaaaaaGAGCACTAGGAGTGCAAGTCCCAACTAGTGATGTACCTGCCTGATGACCTGAGAGGCCTGATGACAATGACCAATGACAACATGTATAGTCTCTTCcactttattaaataattgcgaCATTTAAACAGATTTTCATGTATTACTGTATGACAGATCAATGATGCTCCTGTCCACTGACAtggtttttaaatgtattgttatCCGATTTCTGCTCtccaaatgttttaaaatgcacatatttagatcagggaaatccttttttttttttcttctttcttcgaACACCCGCCCCCAGTACGCTTACCGTACGTACACAACGCCGCCAACTTGAGCTGCAAAAGAAGCTCTGGCCACCCTGTCAGGGATGCTTCTCAAAAAAGTACGGGGTAAACGCTTAAAACGAGCACAAATATTTCCTATAAAAGTTGCGCTCATCCTCAAATGTGTATCACTGGATCATTGcgaagttgttgtgtttggtgccGCTTTATCGTATTTGCGGAGAAGACGTCGGCGTCAGACTCGGGAGAGTTTGAGTTCATGACCCCCTCCAGGACCGTCGTCAATTCGGAGAGCATCATTCAGAAGCTGGCTTCCAtatgaaatgaatgacttcctgtAACTTTGAAGCCCAAGGTGGCGgtggtgtgtacgtacagtcaGTCTTTGGACCTCAGTATTTCTTAAACCCTGCATATGCCCATGCAGTAGGAGattgaattaaaaaatataatcatttCAAAGCCATTTTTACATGTAAGAAACAGGAtggaagtgtgtatgtgtgtaaatgtgtcctACTAACACCGCCCAAAATGCCGTATAAAAAGGTAGTCCTAGTCAGGTGTATATACTCGGGTGAGTTTGCCTGAAGTCCGTTGATGTGTCCGGGACAGCTCGTTGACTTGTAAAATCTGCATGGAGGGAACTTCTGCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGGTCGCTGTGAGGTCTCACGCAGTCAGCAAGGAAATGACTTTACTTTCAGTTTCATAAATAGGACCTATAAGTTTAATTAAATAAGTAAGAGTGAAAACCACCCCACCTGCAGAAGTGACTCCAATGTTAGTGAAGTAACTTGTAGTTTGACCATGAAGTGACCAAAACATTATTACCACAGAATCTGAAATTCAGAAGGCAGCTGGTGAAGAATGGACTGTTGGACTTTTATTTTAGATAAAGTCAGTCAATAtagaatctgtgtgtgtttttaaataactacaTTTTGTTTATGAGTTTCAGCTAAAGGAAACAAGACTGCATCAGCATTGTcacttaatttaattttaaagggGACATATAATGAAAATCTCTCATTTTCAGTCATGGTGCACAAACATTTGAGTATCTGGAGGGCCGACCAACCCAAAACCTGAAATCAAACAACCCAGCCAGTTATTTGTGGGCATCCTCAATCTGATGTAATTCAACAAGCCATTCAGATTCAGCTCCTCTTCCTATGTCACATGCAGGCTCATTAGAAAATACTGCTCCTCATCtccaccatggatgtattataagatatttccatttcagcacccgttatccaatctgtccgtTCAGATCGGCTGCGAGCGGAGCGGCCGCGCCAGCCCACGCACTGCAGCGGACGTTTCAGCATCTCCTCTAATTCTTTGGCGAGCCGCGATCAAATATGTCAAGCCAGGAAGGTAATCATATACAGGAAGGTAATCATATACAGGAAGGTAATCATATACAGGAAGATAATCATATACAGGAAGGTAATCATATACAGGAAGATAATCATATACAGGAAGGTAATCATATACAGGAAGGTAATCATATACAGGAAGATAATCATATACAGGAAGGTAATCATATACAGGAAGGCCACAGCACAGCCGCATACTTTACAAAATGGaacagatttcaaaataaaacacccaggaTTATGGTGATTTTGGATGTTttgacttcacacacacacacagagagagagagagaagagagagagagaattggcagaaaagaaaatagtaaagtaagtaatagtgttttttgaacattaaaacatgtacaATACAAGTtagaacctgaaaatgagcataatatgtctCCTTTAAAAGATAATGTTGATATACCTGCTGTCAGGGTCGGTGGTTTGATCCCCGGCTCTTCTTGTCCACTTGtccaagtgtccttgagcaagacactgaaccccaaattgttCCCGATGGTCAGACAGCTCCTTGCATGGTAGCTCACTGTCATCGGGgtgtgaatggatgaatgatATATAAACtgctttattaatattattaatattattattactgctgCTTGTAGTTGTTAAAAGTCCTAACTGAGCTAGATGTGATGGGCATTAGAAAACAGAACATTTAAGACCAGAGCCTGCTGTCACGATGTAAAAGAAATGTGATGTTTATTGTAGCCAAAGTAAAATCTAATgtgacttatttttttatttggatatTTGTGTAATTGACATTGCTTAGGACAATCATGTTGTGCTTCTTTTTATGTCTTAAGGTGCTAAGCCAAGAGTTTGTCAGGTTGAACTAGACACTGTTGTTGGCTGTGATATCAGaattgtgtatgtacagtatgttttatcTGATGCACTCTCAGGGCATCATGTAATTTCAGGCAGCTCTTCATCATTTCTATCTAAATAAAAGATGAAATATGTCTAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59691 lncRNA upstream 37825 39747185 ~ 39753186 (+) False LOC120557680
XR_005639002.1 lncRNA upstream 47661 39740987 ~ 39743350 (+) True LOC120557695
XR_005638995.1 lncRNA upstream 135273 39653321 ~ 39655738 (+) True LOC120557689
TU59657 lncRNA upstream 137095 39653278 ~ 39653916 (+) False LOC120557689
TU59649 lncRNA upstream 144410 39645075 ~ 39646601 (+) True LOC120557690
TU59831 lncRNA downstream 25978 40472624 ~ 40494622 (+) True G44689
XR_005638999.1 lncRNA downstream 57548 40504194 ~ 40505985 (+) True LOC120557692
TU59764 lncRNA downstream 90665 40537311 ~ 40547848 (+) True LOC120557674
XR_005639006.1 lncRNA downstream 154782 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA downstream 155917 40602563 ~ 40603037 (+) True G44637
XM_039798233.1 mRNA upstream 16761 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 16761 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 477329 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 514032 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 648661 39122788 ~ 39142350 (+) True LOC120557683
XM_039798224.1 mRNA downstream 73296 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 108304 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 198542 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 220206 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 238176 40684822 ~ 40716121 (+) True LOC120557684
XR_005638992.1 other upstream 809278 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 887955 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1178040 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1623793 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 3828401 35962539 ~ 35962610 (+) True trnac-gca_18
TU59833 other downstream 34030 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 57706 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 73296 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 219553 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1304357 41751003 ~ 41763651 (+) False LOC120557139

Expression Profile