RNA id: XM_039797183.1


Basic Information

Item Value
RNA id XM_039797183.1
length 1850
RNA type mRNA
GC content 0.48
exon number 10
gene id thumpd3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16897070 ~ 16906824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGTACAGTTAGCAAGTGTAATATAACTCACTCAAACTATTGTCTGTCGTTGCTAAAGATCACATAAACACGTATCGCGATGTGGCAGCGGTTTAATATAAAAGCCGTATCTGTTACATTTGAGCCTCTGAGCTTGGCACCAGCTGTGATACACATCTGGCAGTTATACCTCTGTGTCTAGTGAAGtgccagcccacaaatacagcATGTCCTCCCAGGAAGAAGATGGGACTGCAGAGCCGGGCCATAACACTGCGGGACCATCCACTTGCTCCTCCACTGAGAATGATGAGACCACTGGAGACATCATCACTGTCACCATTGGAGCAACTGTGCCCACAGGGTTTGAGCACACTGCTGCAGAAGAGGTCAATGAGAAGATTGGGGTTGATGCACGAATCAGCAAAGATCGTGGTCGCATATACTTTCCAATAACCACTGACAAGCTTTTTCAGGTCCATCTTCTGAGGTCTGTGGACAACCTATTTGTTGTGGTTGAGGAATATGATCATTACCAGTTCAAAGAATCAAAGGAGGAGACATTGATGGAGATGCAGCAGCTTGCCTCCAAACTCCCCTGGACTAATGCCTTAGAGGTTTGGAAACTAAATGGCGccctaaaaaagaagaagggcTACCGGAAAGGAGGAAATGGTACCAAAGTAAAACCTAATAGTGAGGCCGCTGATGCAGCCGTTGCTGATACTGAGCAGCAAGAGCTACCGCTGGCGGCGTCTGCTGCTGAAACCCCGACAAAGGCGGAGAGCACAGCTGACACGGAGACCAGCACGCAGGACACCGAGGAGACAGCACCCGAGGCCAAACCCATCAAGTTTCGTGTGACGTGCAACAGGGCTGGTGACAAACACAGCTTTTCCTCTAACGAGGCAGCCAGAGACTTTGGTGGGGCCGTGCAAGAATTCTTCCTGTGGAAAGCAGACATGACAAAGTTTGACATAGAGGTGTTACTAAACATACACAATGAAGAGGTGGTGATCGGCATTGCACTCACAGAAGAGAGTCTTCACAGGAGAAACATCAGTCACTTTGGACCCACTACTCTGCGGTCTACCTTGTGCTATGGCATGCTCAGGCTGTGTAAACCTCAGGCATCCGATATAATACTTGATCCAATGTGCGGGACTGGAGCTATACCATTGGAGGGGGCCATTGAATTTAACAGTTCATTCTACGTTGCCGGTGACAACAATGACATGGCAGTTAACCGCACTGTCAATAATATATGTCACATCCAGAAACGGAGGGCAGTCAAGGGCAGTGCATCTGGATTGCCTATTGACACAGTGCGTTGGGATCTGTGCAATTTACCCATAAGGACCGGCTCTGTTGACATTATCATCACTGACATGCCCTTTGGGAAGAGAATGGGCTCTAGGAAGAAGAACTGGGACCTGTACCCTTCCTGTCTGAGggaaatggcccgtgtgtgcaCACCAGGCTCAGGAAAGGCTGTCTTGTTGACGCAGGACAAGAAATGCTTGGCCAAGGCTATCTCGAGGATGGGAGGGCTGTGGAGGAAGCTGCACACTGTTTGGGTCAACGTTGGGGGTTTACATGCTGGAGTCTACCTCCTCAAGCGAACCGGGGCCGTGTTTGGCCAAACTCCGGAGGATGTCTATGAATCACGAGGGACGGTTAATGCAAAAGGGGATGAGAAGGGTGACAAGGAGCTCTCTTAATTCCCATCCTGCATTTAGGTTCTGAATTTATATTTAAGGCCATTAAGGATTGacattttttatactttttatttttttcagattcTCTGGTCAAGTTTGCCAAGCAtttgtgtgtaattttttgTTTCTCATTTAGTTTAATGTGAAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 73924 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 111129 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 112115 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 114562 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 317458 16579085 ~ 16579722 (+) True G39143
TU52709 lncRNA downstream 61032 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 141111 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 142973 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 143835 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 173842 17080666 ~ 17082576 (+) True G39308
XM_039798912.1 mRNA upstream 155668 16738036 ~ 16741512 (+) True cav3
XM_039798588.1 mRNA upstream 161874 16733386 ~ 16735306 (+) True LOC120557897
XM_039796316.1 mRNA upstream 167164 16724159 ~ 16730016 (+) True gpr61l
XM_039798960.1 mRNA upstream 174363 16718280 ~ 16722817 (+) True parp3
XM_039796276.1 mRNA upstream 181380 16683808 ~ 16715800 (+) False grm2a
XM_039797184.1 mRNA downstream 1018 16907842 ~ 16916563 (+) True LOC120557149
XM_039798758.1 mRNA downstream 10997 16917821 ~ 16962625 (+) True LOC120557990
XM_039796363.1 mRNA downstream 57793 16964617 ~ 16968104 (+) False LOC120556687
XM_039796365.1 mRNA downstream 94350 17001174 ~ 17004437 (+) True wdr77
XM_039798841.1 mRNA downstream 112126 17018950 ~ 17020740 (+) True LOC120558021
TU52524 other upstream 353600 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 461951 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 846750 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 931073 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1249329 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 205289 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 286397 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 286397 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 286397 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 286397 17193221 ~ 17198217 (+) False srsf3b

Expression Profile