RNA id: XM_039797184.1



Basic Information


Item Value
RNA id XM_039797184.1
length 1688
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120557149
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16907842 ~ 16916563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACGTCATCGTCACAGATTTAGCAATGAGCAGCGCAGATGACAGTGACGTGCCTGTGAGTTCATAAAAAGCCATGAGAGCTGAAGGGACTCCATTGACTCTGCGCAGCGGGAAAGTAAACACACGAGATGATCTGGACCATTTTTCTGCTTGCCCAAGCTGTCCTGCTTTATTTGATCCTCACAAACAGATCGAGatccaAGAGCGATCCACCTCTAGACAAAGGCGTAATACCATGGTTAGGCCATGCGCTTGAATTTGGAAAAGATGCATCCAAGTTCTTGAATCGAATGAAGCAGAAACATGGCGACATTTTCACAGTGCGTGTCGCTGGACGTTACGTGACCGTGCTGCTGGATCCGCACTCATACGACACGGTCATCAATGACTCGGACTCCCTGGACTTCACTCGCTATGCACAGGTCCTCATGGAACGGATTTTTAACCTGCGGCTCCCGCATCACCAGCCAGCTAAAGCAAAAGCAATGACCAAAAGGCACTTCATAGGAATGGATTTGTCCGCCCTGAACAGCACCATGAGCAGACACCTGCAGGCGTCACTGAAAGCTGAGATGCCTCAGAACCAGAAAGACTGGAAAGAGGAGGGACTGTTCAACCTCTCCTACAGCTTACTCTTCAAGGCGGGGTATCTGACGCTGTTCGGAGGAgaacagaacaacaacagcgCAGATCCCTCAAGCATCTATGAGGAGTACAAGAAGTTTGATGGTCTCTTGACCAAAATGGCGAGAGGCACACTAAAGCCAGAGGAGAAGAGGACAGTCCAGAGTGTTCGGCAGAAACTGTGGGAGCTTCTGGCTCCAGCAGGTCTGACTGAGGACTCGGGGTCGAGCCCTTGGCTCCACGCCTACAGGCGGCTCCTGCAGGAGGAGGGGGCCGATGAAGAGTCGCAGAAGAAAGCTGTACTGATGCAACTCTGGGCCACACAGggTAATGTTGGTCCTGCTGCTTTCTGGCTGTTGGGCTACTTATTGACAAATCCTGAAGCTCTGACAGCAGTGAAGAGGGAGTTAAGCGGGATCTCCCAGATGGAAACCTCAGAGACCTCATTACTGGACAGAGCTGTGAACACCCCCGTGTTTGATAGCGTCTTAGAAGAGACACTTAGACTCACTGCTGCCCCCTTCATCACCAGAGAGGTTGTGCAGGAAAAGACCCTCCACATGGCTGATGGCCAAGAGTACATGCTAAGAAAGGGAGACAGGGTGTGTTTGTTCCCCTTTAACAGCCCTCAAATGGACCCTGAGATTCACCACGAGCCACAGaaATACAAGTACGACCGCTTCCTGAATGAAGATGGATCAGTGAAGAGAGATTTTTATAAAGGAGGGAGGCGGCTGAAATATTACACCATGCCATGGGGCGCAGGGACCAATGGCTGTGTGGGAAAAGAATTTGCCATCAATACCATCAGAAAGTTTGTTTACATAGTGTTGACCAACTATGATTTGGAGCTGTGTGACCCAAATGCTCAGATGCCGGAGGTAAATGCCAGTCGTTATGGATTTGGAATGCTACAGCCAGAGGGAGACCTGCTTGTCCGATACAAACCTAGGAATACACACTAGGACTTCAAAAACAAGCACATATTTTATATGCGCATTTCAACACATGCACATTGTTTATAGTGTTAATATgctctttttacttttatactccatatttata

Function


GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K01831 PTGIS, CYP8A; prostacyclin synthase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 84586 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 121791 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 122777 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 125224 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 328120 16579085 ~ 16579722 (+) True G39143
TU52709 lncRNA downstream 51293 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 131372 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 133234 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 134096 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 164103 17080666 ~ 17082576 (+) True G39308
XM_039797180.1 mRNA upstream 1018 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA upstream 1018 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA upstream 1018 16897180 ~ 16906824 (+) True thumpd3
XM_039798912.1 mRNA upstream 166330 16738036 ~ 16741512 (+) True cav3
XM_039798588.1 mRNA upstream 172536 16733386 ~ 16735306 (+) True LOC120557897
XM_039798758.1 mRNA downstream 1258 16917821 ~ 16962625 (+) True LOC120557990
XM_039796363.1 mRNA downstream 48054 16964617 ~ 16968104 (+) False LOC120556687
XM_039796365.1 mRNA downstream 84611 17001174 ~ 17004437 (+) True wdr77
XM_039798841.1 mRNA downstream 102387 17018950 ~ 17020740 (+) True LOC120558021
XM_039798839.1 mRNA downstream 111146 17027709 ~ 17032694 (+) True irf6
TU52524 other upstream 364262 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 472613 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 857412 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 941735 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1259991 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 195550 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 276658 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 276658 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 276658 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 276658 17193221 ~ 17198217 (+) False srsf3b

Expression Profile