RNA id: XM_039797233.1


Basic Information

Item Value
RNA id XM_039797233.1
length 3172
RNA type mRNA
GC content 0.42
exon number 8
gene id tmem183a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13446291 ~ 13456049 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGTCATTCCATGATGGCTGAAGATCCTGGCGGAACACTTTTCAATTTATCTcctatctttctttttttctctctacctCAGCTTGCCATAGAGACATGGCAGGACCAACAAGCCCGTTAAGCGTCCACAGATCATTGGTGTCGACATGCCCAAGAAAGGGAACCGAAAACGGCTGAAATTTAGGGCCGGGGACGTTTGTTCGGAATCAGTGACCGTTGCTGATTATGCTGATGCCGACCCAGCCGTTGTGAAGTCAGGGAGGGTGAAGAAGGCTGTTGCAAATGCAGTTGAAAAAGAAGTGAAATTACTCTGCGGCCTGGAAGCATCTCAGGGTGCTGTAGAGGAGGTCCTCTCATCTTCAGTGAGTGTCACAGCCGACGCTTTGGACAGCAGTGATGACCTAGACCCCGAAGAAGATGGAGAACATGAAACTAAAGCGTCCcgcaagaagaaaaacaagaggAGAAAGGAAAGCAGTGAGAGCGGGGATGGGGGGGAGTATCCAGTGGATATTTGGTTAATGCTTGCCTCCTACATTCGGCCCGAGGATGTGTGCAGATTTGCTCTAATCTGTAGGAATGCCTGGACGGTCACATGCACTGCAGCTTTTTGGACCAGGCTTTACAAAAGGCACTACAAGATTGATGCTGACCTGCCATTCCGTCTCCAGCCTGACTGTATTGACATGATGTGCGCTTTACGGGCCCGTGTGATTCGCTCCCTTTTCCATTTGTATGAGCCGTTCAGCTTGCGTGTCTCGAAAATTCCTGCCTTGCCAGAGTCCACGCCCACAACCTTGGTCAACTCCAAGTGTTTACTGTTCTGGGTCAGAAAGGTGTCAGGGACTCGGCCTGAGGCACTATGGGAGTTCAACTTCAAGTTTTTAAAGCAGGGACACAGTAAGAATGGTTGTGCCAAGTCCTTGTGCATGCCCAGACAATACAAAGAAGTCCACACAAACCCAGACACTGACTGCTACATGCTTCAGGTCACCACCCTCAACTTCATCTTCACTCCTGTGGTCATGGGCATGACGCTGACCCTGTTCACAATCAACGTTAGTACTGACATGCGCCACCACCGCGTTCGTCTGGTCTTCCAGGACTCGCCGCTCCAGCGGTGGAAAAAGAGGGGAGATCAGGGTGGGACCCAGGTGGTGTTGGACCCCGTACACAGTGTAAAGCTCATGGACTGGTGGCACCCACAGTATCCATCTTCACCCTACACATAGGAGTCCTGCCCCCTCAGCAGAACGTCACACCAAGAACCCTGCTGTTATCCTGTACACTCACCAGAAATATGATATTGGATGACTCTGCAGAACCCTGTGTTGTGTTCATTCACATTTTGATTGTCATTGTTAGATTCTTAAGAAAGCAAACATTGACTGGCCTGAGATGGGATGCAAGCCCACCTTCCAGTGTCAGTATCAAATGTGTTGCATGCCCATCCACCACCGCAACCTCCACACCCTACTTAGAATGTTATTTGAACATCAAAGCTCTTCATGGATGTAAATCATGTAGTGCAGAATTGTCCACTATGAACCTTATTCATTATTCCAGAGAGACTGGGCTTGTTATCTATCTGCCATGTCCACATAGGGACATTGGCAGTTCCTCTACTCCTCAACTTCAGCAGTGTCTTAGGCCTAGTCCATATGTACGCAGGTATTTTTGTCCAACCAGGTTTTTCCCTCCTTTGTTCTAAAGCAAAATCCTGTCAACAcaagcattgtttaaaaaaataaaaaaatctccaTCCAAATGAAAACGCAAAAACACAGTTGAAGCGCTGTAAACAGCATGCCAAACCAACAGGTGGCCATGATATATCCCAAACCCTAAAGCCATGTTGGCAAATCAGAggcctgaagaaaaaaaaaagaaaagctattAAGATCGGTTTTCAGTGACCTTCAGTGCAGTTTGCGTGTGGACGAAagaccaaaatgtatttaaaaaagcaacatttaaaaataatatataataaaatacccGTGTACATGTGGACTAGGCCTTAGTCTTTCTGAAAACATGGAGAAGTGGGGCTGGGTAAAATGGGAAAGAAACCAGAAGATCATCATCTGAAATCAGTGATTGTTTTGATACCTGTTTATATGTGAAAAACAACAGCTTGTTTATTAGTTTCCCACTTTGAACAGCTGGGAGAAATCTAACTTCAAATAGTTTTCCATAGTTATCTCAGACAGGTGCATAATGTtttacaatataaaaaatactgtGATATGATCACAATAATAGTTAATAGATGATAAATATTGACTTATTGCTCAGCCCTACAGACATGCCAGAGAGAGGGTCTTGTACATTTTTAGAGCTACCGGTTGCATAAAAAGATTCACAAGTCTGCCATTGTTTTACGTTAGACAACATGTTTAACATGAATGTTGAACCTATGTGTGTAACACAATTTCTAGGAGTTTTTCTCATGGATTACCAGGTGGAACATTTGTACTGTCCTcccttggtttgtttttatgctTACTTGAAAAGTTGCTTAAATTTCTTGGTTTTGCATTGTTTTGAATGTTGACAATGTTACATCAAGAGTTGCATTCTTTtagaatcatgtttttttttcttgatgtaTTTAATTCAAGGCAGCATCACTTAGTATTGTGTCAATATTAATGACTTTTGACTTTTTACTGAAGGGTCAAAGAGATGATTTACCTCGGACCTCATCCACTCATTTggggaattattatttttttttttcttctttctagtGTGTCTTggttaaaaacatcttgattggCACCTTGCTGACTGTGAGCCATGTACCCTACTGCCTCCTGTGGAATCTGATTCTCAACTTTGAATGGCTCGAAGTGATTTAAAGTGGTCTGTCTAATGCGTGTTGAATGTGTGTTGAATCATACTAATCACATACTTGATTATGATGGGGAGAGAGTTACCATTGGCATTGATTTATCCATCTGTCAGACACTCAAAATTATTTTACCTGGATTGAATTGCATATATATCAAGATATTGTCAATGAAAAATATAGATTAACAACAAACCGTTTACAATTATAGAAATAAAGACAGGTGGATGTTCTGGTCGTTTGTCTAGTTTTGTCAGATGAGTTACATTGAAAAAACAACTTCactgaaataaaaactaaaactgcCCATTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51065 lncRNA upstream 73940 13319684 ~ 13372351 (+) False mdm4
TU51054 lncRNA upstream 134150 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 143084 13296376 ~ 13303207 (+) False vamp3
TU51006 lncRNA upstream 329719 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 366404 13075419 ~ 13079887 (+) True LOC120556864
TU51173 lncRNA downstream 880 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 319732 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 455280 13911329 ~ 13989841 (+) True G38156
TU51240 lncRNA downstream 535860 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 546913 14002962 ~ 14003187 (+) True G38164
XM_039797231.1 mRNA upstream 63649 13380120 ~ 13382642 (+) True myog
XM_039797211.1 mRNA upstream 73919 13365524 ~ 13372372 (+) False mdm4
XM_039797213.1 mRNA upstream 73919 13365524 ~ 13372372 (+) False mdm4
XM_039797212.1 mRNA upstream 73919 13365892 ~ 13372372 (+) True mdm4
XM_039797208.1 mRNA upstream 81951 13353232 ~ 13364340 (+) False LOC120557160
XM_039797235.1 mRNA downstream 886 13456935 ~ 13502920 (+) True tfeb
XM_039797239.1 mRNA downstream 886 13456935 ~ 13502920 (+) False tfeb
XM_039797237.1 mRNA downstream 886 13456935 ~ 13502920 (+) False tfeb
XM_039797238.1 mRNA downstream 886 13456935 ~ 13502920 (+) False tfeb
XM_039797234.1 mRNA downstream 886 13456935 ~ 13502920 (+) False tfeb
TU51060 other upstream 78002 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 159980 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 238033 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 252971 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 254380 13191778 ~ 13191911 (+) True LOC120558254
TU51174 other downstream 880 13456929 ~ 13528319 (+) False tfeb
TU51331 other downstream 771166 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 879340 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1352303 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 1409010 14865059 ~ 14874459 (+) True calcoco1b

Expression Profile