RNA id: XM_039797269.1


Basic Information

Item Value
RNA id XM_039797269.1
length 989
RNA type mRNA
GC content 0.51
exon number 5
gene id abhd14b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19917889 ~ 19923549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTCTTCCTGTTTTCGGGGGGAAAAAGTGAAACTGTAGCTGGTTCAGGATCATAGTCTATGTTCAGGATCAAACTGTCCTGCTTCATTTTACACGCTGATCATCCGCTCAAAACTGCAGGGCGTCAGgttttTTGTTCAGGATGTCAGCTGTTAAGATGACAGAGGGGAGTGTGCAGGTGGAGAGCTGCAAAGCGCCGCTGTTCTACAGACAGAGTGCACCTGCCGCAGAGGAAGTTAGGATGTCAGTTTTACTCCTTCACGGCATCCGTTTCTCATCAGAAAACTGGCTCAACATTGGCACTCTGGAGACTCTGGCCAAAGCAGGCTGCCGTGCGGTCGCCATCGACCTGCCAGGGCTCGGCCGGTCCAAGTCAGCCGAGGCCCCTGCCGCGGTTGGAGAACTGGCCCCTGCAGATTTCCTGAAGGAGGTGTGTGAGGAGCTGAGCCTGAACCCGGTGGTGGTGATCAGCCCGTCCCTCAGTGGGATGTactccctccccttcctcctccagcACCAGGCTCTGATACGAGCCTACATCCCTGTAGCACCCATCTGCACCGACAAATTCACAGCAGAGCAGTACCAGAGTGTAAAGGTCCCATCTCTGATCGTTTATGGTGACCAGGACACTCAGCTTGGAGAACTGTCACTGAGCAACCTGAGCAAtctggccaatcacagcgtgGTGGTGATGAAAGGAGCGGGTCACCCCTGTTACCTGGACGACCCGGACACTTGGCACAAAGCCCTCACTGACTTCCTCAATACCCTGTGAAGCTGCTCGTTGTGGAGAGATTCTCAACAGCAACAGTCACACATCCActtcaTCTGTACAAAAGAATGGAGCGACATGGACCAGTGCCCAGAAAAGAAGGAGCTAAATCttccacgcacacaaacattcacactcacacacgtacaagaaataaaaacaaaacaaaaaataattcaaaacatttttgatttcAGATCTCAAACTTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54169 lncRNA upstream 155391 19761173 ~ 19762498 (+) True G40284
TU54153 lncRNA upstream 176501 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 176501 19739815 ~ 19741388 (+) False sema3fa
TU54057 lncRNA upstream 469623 19442047 ~ 19448266 (+) False slc38a3b
TU54235 lncRNA downstream 144729 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 223186 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 233305 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 303788 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 342291 20265840 ~ 20266366 (+) True G40442
XM_039797991.1 mRNA upstream 29157 19883601 ~ 19888732 (+) False si:ch211-161c3.5
XM_039797990.1 mRNA upstream 29157 19883602 ~ 19888732 (+) True si:ch211-161c3.5
XM_039797987.1 mRNA upstream 29157 19883620 ~ 19888732 (+) False si:ch211-161c3.5
XM_039797985.1 mRNA upstream 32924 19877422 ~ 19884965 (+) False si:ch211-161c3.5
XM_039797986.1 mRNA upstream 32924 19877422 ~ 19884965 (+) False si:ch211-161c3.5
XM_039797440.1 mRNA downstream 237820 20161369 ~ 20167791 (+) True hemk1
XM_039797437.1 mRNA downstream 264106 20187655 ~ 20195749 (+) False glyctk
XM_039797432.1 mRNA downstream 264112 20187661 ~ 20195749 (+) False glyctk
XM_039797435.1 mRNA downstream 265849 20189398 ~ 20195749 (+) False glyctk
XM_039797434.1 mRNA downstream 266145 20189694 ~ 20195749 (+) False glyctk
TU54184 other upstream 58548 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 285877 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 285883 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 591264 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1691850 18215706 ~ 18226039 (+) False LOC120557740
TU54259 other downstream 224555 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2026827 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3825361 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3834209 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 6345053 26268602 ~ 26273315 (+) True G41825

Expression Profile