RNA id: XM_039797287.1


Basic Information

Item Value
RNA id XM_039797287.1
length 1892
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC120557186
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29972493 ~ 29975991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTATTTTGTTTATCAGTGGCTACATCCTGTTGGTCACAGCTCTTCTTTCAATCTGCTCTGGAACTATTCATACTACAAAACAGACTATATTTTGTCCCCGCCACTTTGTAATATTCAAAAAACTTTGTTGCACACGTCGCTTAAAGCGGTCAGGAGAGTTTAACTTAGAAACATCTGCCTGGAaatcctatttatttttttttttttttttactctggaGGGTTCAGTGTTAGCTTGTAACTTACCGTTAGCCTGCTGCTCTGAGAGCAGTGATGCTCGCTGACAGAGTTTATCTTTCTGCGTATTTCGACTGTTGACTCAAACCCGAGAGCCTTCATACATTATGGCGAGTGAAAACGCCGAGACAAACGCGGGGAACGATAATGAAACTGGTCCACCATCCGAACCAAACGAGCACGACTATGCCCACACTGCGGCCAGTAACTTAACTTCGACGGAGGCGTCTTCCTCCTCGGTTACACCGGCGGCTGACGGTGGGGTCCCCGCGCAGGAAAGCTTTACGACAGCGGCTGAACCCGAGCATAGCTCGCCAGGGCAGCCCACCCTGCCGGTGGAGCTTCCCGAACCGGCTGTGGGTGCCGAAGTGGACTGCCCCGGTGGAAATGATGTGGAGGTGTCTTCTCCTCCGAAGACCGAAGAGGACCCCCAAGAAGTAGATGCGACTAAACGTGTTGCTGCCATCTCTCCTGCAATGGGAATTGGCCGCTGGCGTCCTAAGCGGCCGGAGGACAAGAACTGCGCCACCTGTAAGTTTGAGTTCGAGCGGCAGGGCCGCAGGTTCAACCGGAGGGCAGTGTACACCTTCAGCAACCCGGAGACTGTGCAGTGGGTCTTCCCAGACGCCACAGTCAACGAGAAGTCCTTCCTTTGCGAGACCTGTGCACAGGTCATCAGGAACAAATGCAAACGCAAACAGAGCGGGAAGAGGACTCTGTGGCTGAAACCGCCTCAGACAAAacggTCAGTGGTGAAAGACAAGAATAAGAGAGGTCGCAGGATGGGGAAGAAGAGCAAAGCGGCGCTGCTGGTGAGCAAGTCCTGCTACAAGTCTGCTTTCAAAATGCTCTGGTCCGCCAAAGGCGCCCGGAAGCCCATGATGGAGTTCTGGAGCAAACAGCTGAAAGAGGAGATGAAGGCGCTGAcgaggcagacagacagtccCTTTCATCAGAAGGTGTCGAACAGAAAGCCCCTGTCTTCCTTCCCCTGGCGGCGCTGTCTGAACTGGGCCCAGGACAAAGCTCCACTCGTCACCACCTGCCTCACCGCGCTGTTCCCTGACATCACCGCTCTCTCTAAGAGCAGCAAccAGATGTCGGCGGACCAGGCCCAGACTCTGCTGGAGCGCCGGGCCGTGTTGGCGCTGTCCATCCCGCTCTTCACCAGGAACATCTGGAAGAACAACTTCCTGCAGGCCGCTCTGGGGGCAGAGTTACGCCTGCAGGGCTGCTCTGGCACTGCCCTGGACGCCCTCAACACCATGGGACTGTGTCAGAACAAAGACACGGTCAGGTTACTGCTGCACAGGCTCCGAAACGGCAAGAAGAAGACACTAACACAGAATGGACGGCAGATGAAAGGAGAACAGATGTCAGACGTGGAGGAAGAGGATATTGAagaagaggggaggaggaggaggaagaagaagatgatgatgatgatgatgaggaagaggaggaagacgacGATGAcgatgaagaagaagaggaggaggatcaGGAAGAAGGCGAGGAAATGGAGATGGCGGTAGAGGAGGAAGAAATGGATGCGGTAGAGGTAGAAGTGCAACAGGTAGAGGAGGAAAAGGCAGAgatggagaagaagaggaggaagaagaaggcaaagaagcagaggaaggaggagaagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57215 lncRNA upstream 311070 29661206 ~ 29661426 (+) True G42536
XR_005639012.1 lncRNA upstream 505834 29464818 ~ 29466662 (+) True LOC120557726
TU57113 lncRNA upstream 680751 29256755 ~ 29291745 (+) False G42453
TU57111 lncRNA upstream 706721 29256755 ~ 29265775 (+) True G42453
TU57097 lncRNA upstream 744176 29225774 ~ 29228320 (+) True G42441
TU57373 lncRNA downstream 15932 29991923 ~ 29994778 (+) True G42672
TU57376 lncRNA downstream 26682 30002673 ~ 30005924 (+) True G42674
TU57377 lncRNA downstream 33046 30009037 ~ 30010008 (+) True G42675
TU57418 lncRNA downstream 61006 30036997 ~ 30040399 (+) True G42700
TU57445 lncRNA downstream 133554 30109545 ~ 30109834 (+) False ergic3
XM_039797369.1 mRNA upstream 135030 29725512 ~ 29837466 (+) True stab1
XM_039797731.1 mRNA upstream 255156 29670469 ~ 29717340 (+) False nisch
XM_039797729.1 mRNA upstream 255156 29670495 ~ 29717340 (+) True nisch
XM_039797728.1 mRNA upstream 255156 29673615 ~ 29717340 (+) False nisch
XM_039798804.1 mRNA upstream 315311 29639701 ~ 29657185 (+) True hgh1
XM_039798414.1 mRNA downstream 110432 30086423 ~ 30088843 (+) True LOC120557789
XM_039798981.1 mRNA downstream 116176 30092167 ~ 30098233 (+) True LOC120558110
XM_039799137.1 mRNA downstream 126911 30102902 ~ 30106485 (+) True hesx1
XM_039797120.1 mRNA downstream 133544 30109535 ~ 30135834 (+) True ergic3
XM_039798602.1 mRNA downstream 218648 30194639 ~ 30198902 (+) False mych
TU57106 other upstream 730243 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 3273925 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 3423697 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 3423697 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 3699181 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 2484141 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 2494804 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 3061943 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 3211747 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 3286204 33262195 ~ 33336767 (+) True angpt4

Expression Profile