RNA id: XM_039797290.1


Basic Information

Item Value
RNA id XM_039797290.1
length 3402
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch1073-456m8.1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14574133 ~ 14583735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCCGTAGTTCACAGCCTGGGCGTCGGCAGTACTTCTTTGCTGCTGCTGCGTAGGAAAAACACCTCTTCACCAAGAGAGCTCGGAGGTGTATCTTACATAAACGAAAACGTAGCTAGCTActataaaacatacaaaatgcATTCAGTCACGCTGGACAGCAGTGGTTCGCCACGGAAACGGACGTTATCTCGGGGACTTAGCGAGGATGAGTCGCTCCGCTGCATAATAAAAGAGACCGAGAGCTCATCTAGGCGTCTGACACGAAGCGACAGCCGAGCAGGCACCCTGAAGAAGAGGAGTGACAGTCAGCAGTCTGACCAGGACATCTTAATGGGACTCCCAGAAATGCTGGAGCTGCAGGCCAACTATGACGAGGTGGTGCAGGAGCTGCGTGGGCTGGAGGTTGAGCGAGAGACTCTGTTGTTCCAGGTGGACTTCCTGCAGGACACTCTGGAGGGCGTGGAGGAGGTGCTGGCTGAGGCCCAGAGGGAGGCTGGACACGCTAGATTGGAGTTGGAACAAGAGAGAGAGGCCAAGAGGAAACTGGAGAGCATGGTCTGCTCTCTGATGCAAGAGGTGGAGAGATTGAAAGAGGAGAGGAATAACACTCCTTCTGCTCCAGCGAACGCGGATGGAAGTGTTGACGAGGAAACGAGACAAGGACGCAATGAAAGTGAATTGACGAAAGACTTGTTTGAACCTCACAGCAATGAAAGCAGAGGTAGAGCGTCGGAGGAAGAGGGACAGAGTGAAGCTCTGAAGCTGCGAAAGTTGGCTAATAAGCCCCTGGGCCACATGCCCTCTCTTGCAGTGGGCAACCCGTTTTCTGTAGACGGGGTCCTGCAGAGGCCTTGTGAAAACGGCGTCGATGACGGACAACATCCTTGTTCCGACAGGACCGACTCGGACAGCATCAGTGCCTACGAGGATGCGTCTGCTGAGACTCCAGAGCAGGACCGGCTGTTTCCGGGTGACGCAAACACTTGTGAGCTGCCTGATGATTCAGAGAGAGACTCTACTAACAACTGCCCGGTCAATGACGGGGACACCCAAAACCCCAAAAACCCTGATTCTTGTCTTGTGTCTTAATCGGTTTTATCTTCTACTGGCAAAATGGTCAATGATTATTGATTATTTGGTGGTAATTCAAGAGCACTTTGATTTGCAGTGTACCCACATCTGATATTTGTCTTCTTAGAAAACATTCAGAGTTGTAATTAGTGCTCCAATGAGTAGTGGATTGAAAGAAAATtgatctgcaactattttgacaatcAATCAAGAATCATCTTTGGGATTTGGACTGCTGGTGGGAATTTGAAGACACTGGGAAATTGTAGTAATAATTTTTCActagtttttgacattttataactaaatgattaatcaattaatctgcagcttgattgataatgaaaataatggttAATTGCAGCCCTATTTGTATAACACTGTAGCAGAGTTGTAAGTTTCAGTTTTAAATTCAGAACAAAGAAACTCAGGATCCAGGTTGTTGACTAGCTGGAATTCCACTGATGACTACTTAATATTATTTGCcattaatttctttttaatatcGGTCTTAACTTCTTTTTGTAACATGTCGATAGACATGGAAAATAGTCTGTGCTGCGTTGACCATTTACCTCTTTTAATAAGGTTTATCTGTATACTAGCAGCTGCCAGGAAACACCGTGAGCTCTGCAAGTATATGGACAGGGACTGTTGATGTTTTGGCTCCAGGCACAGTAGAAGGTTGGGAATTTAGAGCGGCAGTCGATCATAGTTGTTAACTGCATTTAAAGTGCATATTTGACGTGGCTGTCCTCAGTTGTAGAGCTCACCGTACAGAAAGTTTAAGACGTGTGACATAGCTCTTTGGAAGCTAAGAGCGGGTACACGTAATCCAAAGCAGTTGTTTTAAAAGTTTCTAAGATACAGATTTTTCAATGAAGGGAAAATGCCATCTATTTGCTGCCTTGCTGATCTTTAAaagaagatttatttttttatcttttcatatacatccctttttcctgtttttatgtTAAATTTAGGGGAATTGATTTTGGCTGCATTTGCACTTTCTAAAGTTCTTGTATTGTGGCATAAATTTGTCCAGATTCTATCAGAAACCACATTCCCTTAATGACCAAACACGTCAGCGAGAAGTAATCAGCTGTCCTGCTGCAAGCTGTGTTCTCTGCCTGCATGGTAATGCTGTATGTTTGCACATTTCCAGTGAAACTTGCTGAAATGAGTCTCTTTGGATGTCTCTGATTGCTGtaaacattttgtatttaatcgcaattcttttgtttttgtttttttacattgttttttacgaTGTTACATTTCTTTCATGCTTGATGCTAGAACAGACCTTTTCACCTCATTTATGATAGTTTGCATGAGCACCTAAGAATGTACATTGATTTCCAAACTGCACCTGAATTGATCAGTGTCATTTATTAGTACTTTTGCACACCTATATGACATAATACTTTGATCTAAGGTATTTACTGCGATGATTGGTGTTTTGAAGGGATTTTAGTTTTGTTTGCAAATAATGTATCGTTCTGTCATTTCCTGGTCTTAAAGGTGGAACTTTAGTGAAGTTACtaaataacttcagtttttaaTGGAACATATATGACACTAAATGAAAATCACAATTTGATATCTGATTCTGttgcacaaaaaacaaaagcgGAACAATATTAACACATTTGTGGAAATTTCAAACTAAGGTAGAATGTTTGCAGTGCTACATTTTAGCTGCTTATTTTATGCGTTTAGGCCGTGTGTTAATGTTTGTATTGACTCATTTGTCTTTTGTATTAACTTTTATCACACAGagtccttatttttttttcttctccacaaAATGAGCTAAAAGAAGGTTTCTGTTACTGCAGTGCTGTGTGGTGCCACAGTGGTCAGTTCTTGAGCAAAGGTCATTTGCAACCAACGCTAGTCCGCCATTTCTACATCCGCATTCAGTCATTCGTTGTTTATGCTGTTATCAGTTCATTTTAGGTTCTTATTGATTTCCTTTCAGGTCAAAGGATTTGGTTTGTTGTAATGAACCAGTAAAGTAATGTTACTCTGACTTCAAATGTTCCTCGTCATTTTAAACTTCACTGGTGCCGTAAGCATTTTGAGCACACAGCAGTGACTTTGACAATTTATCAAGTAATCAAATTGGTTTGTGTTTAATTTTCCTCAACAATGCAAACAATATGTTCTTACTgtaattttaatgttttatgggtctatatatttttttcttgtcCTGGGCTTTGTATTAAATGGTCAGATGTAATAGTAAATTACATACATTTATACTTGTAACCAGACTTCCAGacatatcaaaataaaaagagTGAATAATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51447 lncRNA upstream 79394 14492903 ~ 14494740 (+) True G38331
TU51433 lncRNA upstream 107450 14464974 ~ 14466684 (+) True G38317
TU51375 lncRNA upstream 265693 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 279977 14293933 ~ 14294157 (+) True G38274
TU51342 lncRNA upstream 378717 14193103 ~ 14195417 (+) True G38247
TU51611 lncRNA downstream 24104 14607839 ~ 14610422 (+) True G38441
TU51621 lncRNA downstream 59197 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA downstream 105265 14689000 ~ 14690625 (+) True G38449
TU51683 lncRNA downstream 126991 14710726 ~ 14712134 (+) True G38496
TU51682 lncRNA downstream 129049 14712784 ~ 14714517 (+) True G38495
XM_039797073.1 mRNA upstream 118158 14452194 ~ 14455976 (+) True ctsz
XM_039798670.1 mRNA upstream 130329 14435641 ~ 14443805 (+) True npepl1
XM_039798651.1 mRNA upstream 139112 14416436 ~ 14435022 (+) False ankrd52b
XM_039798650.1 mRNA upstream 139112 14417089 ~ 14435022 (+) True ankrd52b
XM_039798648.1 mRNA upstream 228529 14339649 ~ 14345605 (+) False si:ch211-159e12.5
XM_039799040.1 mRNA downstream 15288 14599023 ~ 14602910 (+) True olfml3b
XM_039799128.1 mRNA downstream 35782 14619517 ~ 14626326 (+) True pmela
XM_039799140.1 mRNA downstream 48143 14631878 ~ 14637440 (+) True prph
XM_039799098.1 mRNA downstream 54663 14638398 ~ 14650434 (+) True timeless
XM_039799141.1 mRNA downstream 69062 14652797 ~ 14668454 (+) True LOC120558200
TU51384 other upstream 236374 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 340609 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1045815 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1205845 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1287823 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 224617 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 281324 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1061776 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1381679 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1466170 16049905 ~ 16050430 (+) False eefsec

Expression Profile