RNA id: XM_039797300.1


Basic Information

Item Value
RNA id XM_039797300.1
length 6195
RNA type mRNA
GC content 0.49
exon number 23
gene id srgap2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13857761 ~ 13919015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAACTGCACTCTCAGCTGTTAAACACAATTAACAGCATTAACAGTCCTGCCGGACGGACGGCTGACTGTctgcctgttgttctgtgtgtttgaatAAGTGTGTGTATGAGGAGGGGAGCCTATACCGCACTGAAGCCAGGATGGAAGCCAAAACCATCCGCTTTCTCTACAGCCACCGTTGTAAAGAGGTCCGAGCCCAGCTGGTGGAGCAGCTCAAGTGTCTGGATCAGCAGTGTGAGCTGAGGGTGCAGCTGCTGCAGGACCTGCAGGACTTCTTCAGAAAGAAGGCCGAGATCGAGGTGGACTACAGCCGCAACCTTGAAAAGCTGGCCGAGAGGTTCCTCACCAAGACCCGCAGCACCAAGGACCATCTTCTCAAGAAGGAGCACAGCATTTTATCCCCAGTGAACTGCTGGAACCTGTTGCTGCTTCAGGTGAAGAGGGAGAGCCGTGACCACGCCACACTGTCTGACCTCTACCTCAACAACATCATCCCCCGCTTCGCGCAGATCAGCGAGGATTCGGGACGCCTCTTTAAGAAGAGCAAAGAGGTCGGTGTCCAGCTGCAAGAGGACCTGATGAAAGTTCTTAATGAGCTTTATACGGTGATGAAGACGTACCACATGTACAACACTGACAGCATCAATGCCGAGTCCAAGCTGAAGGATGCGGAGAAGCAGGAGGAGAAGCAGATGGGACGCTCCGGTCGACAACAAGACGACCGACAGACGCCACGTTCCCCTGACACCTTGACCAGCATCAAGACCGACGAGAAGCCCGTCCGACGCTCCAGTGTCAAGAAAATCGAGAAGATGAAGGAGAAGAGACAAGCTAAGTACACAGAGAACAAGCTGAAGGCCATCAAGGCCAGGAATGAGTACCTGCTAGCTCTTGAGGCCACCAACAGCTGCGTCTTCAAATATTACATCCATGACCTCTCCGACATCATTGACtgctgTGACCTAGGCTACCATGCCAGCCTGCAACGCGCCCTGAGGACCTACCTATCTGCGGAACAGAACGTAGAGACGTCCAAACACTCCGGCCTGGAGACACTAGAGGGGGCCGCAGAGAGTCTGGAAGCCAACGGGGacaaacagaagctgatggagaccTACAACAACGTCTTCTGCCCCCCAGCTCGTTTTGACTTCCAGTCCCACATGGGAGACACGatGGGAGTGGTGTGTGCACAGCAGCCGCTGGAAGTCGAGCTGCTCCAGAGGTGTCAGCAACTGCAGTCTCGCCTCTCCACCCTcaagattgaaaatgaagagGTGAAGAAAACGATGGAGGCCACTCTGTCCACCATCCAAGACATGGTGACGGTGGAGGACTACGACGTCTCCGAGTGCTTCCACCACAGCAACAGCATGGAGTCGGTCAAGTCCACTTTCAGCGAATCCTATCTCAGTAAACCCAGCCTGGCCAAACGACGGGCCAATCAGCAGGAGACGGAGCAGTTTTACTTCACGAAGCTGAAGGAGTTTCTGGAAGGCAGGAACCTGATCACCAGGCTGGAGGCCAAGCATGACCTCATCGACAAGACCCTGGAAGAAAGTCAGAAGACTGACTGTTGCCTTTCCAGTGGACGGAGAAACTCGGCGGTACGGAAGCAGGAGTCTGGCGAGGCCATTCCTCTAATGGTCAAGAGCTGCATCCGCTTCATCAGTCGCCATGgtctgCAGCATGAGGGCATCTTTAGAGTGTCAGGCTCTCAGGTGGAAGTCAATGACATCAAGAATGCCTTTGAGAGAGGTGAGGACCCGCTGGCAGGGGACCAGAACGACCACGACATGGACTCCATTGCTGGCGTCCTGAAGCTCTACTTTAGAGGATTGGACCACGCCCTCTTCCCTAAGGAAGTCTTCCATGACCTCATATCCTGTGTCTCGATGGAGAGCCTCCATGAGCGGGCAGTCCACATTAAGAAAGTTCTGCAATCTCTGCCGAGCAAAACCCTCATCATTATGAGATACCTGTTCGCGTTTCTCAACCACCTGTCCCAGTACAGCGAGGAGAACATGATGGACCCCTACAACCTGGCCATCTGTTTCGGCCCCACCCTGATGTCTGTCCCCGAGGGCAACGACCAGGTCTCTTGCCAGGCCCACGTCAACGAGCTCATTAAAACGATCATCATCCACCATAACACCATCTTCCCCGGGCTGCAGGATCTACAGGGCCCCATCTACACCATTCCTGGAGCTGGAGATGACTTCTGTGACAGTCCACACTGTGAGCCCCCCCTTGTGGAAGAGCCTGCGCCTGACACCGTCTCTGTCAGGCACAACAGCGAAGATGGCTCCTTGGCTGTTTCAGAGTCTGAACCTTTCGAAGCCATTGCTCGGTTCGACTACTCCGGCCGGACTTGTCGGGAGCTATCGTTCAAGAAGGGCGCATCTCTGCTTCTGTTCCAGCGAGTCTCTGACGACTGGTGGGAGGGACGACATAACGGAGTGGATGGACTGGTGCCACACCAGTACATTGTGGTCCAAGACACGTCTGACGGGGACAGGGGAAGTCCAAAGCCTGATGTGGACAGCAGGGACCTGCTGGAGGAGAAAGTGTCTACTAGAGGCAATGCTGCCTCTCCTACTGGAGCTCATGTGGCGGACATCTACCTGGCCAACCTGAACAAGCTGAGGAAGCGTCCAGAGTCTGGGAGCATCCGAAGAGCGTTCCGGAGCTCAGAAAGCGACGGTACGAGTCCAGGAGCCagtggaggggggggaggaggaggggtgagaACCGCGTCTCTTCCTGTTGGTGGGGCTCTGGTGAAAGAAACTGGAGACAAACGACCCGTCAGCGCTCACAGCATCCTCAACTCAGTCACTCGCCACTCCTCTCTCAAGACCAAGGTGGAGAGTCCACAGTTGCGCAAGACGACTACAGCAGGGCGCTCTAAGAGCTTCAGCAACCACAGACCGCTGGACCCTGAGGTCATAGGCCAGGTGGAGCACAGCTCACAGGACATAGAGGCTGAGATGAGCTCTGTGAGTGAGCTCAGTAAGTTGGAGAGACAGAGCACCTCGAAACATACCCACACACCTGACGTGGTCCTGGACACActtgagcagctgaaaggtgtGGGTGGTggcggtggaggaggaggaggaggagcctcGGAGCCCTCCAGTCCACTCCACTCCCGTCTGTTACGGGACTGTGAGGGGGGCTCCTCACATGCCCACCCACTTCAGCGCAGCGCCTCCTCCGCCAGCGACACGCCCTCCTCCTTTCGCCCGGCCAAGAGCCAGCCACGGAGCCCCCTGCCCTCCGCcacatccccctctctctcctcatctGTACCTTCCTTTAGGGAGCTGCGCCCCCCAGCAACTAGGCCCAAGCCGGTGGTGTTCCCAAAGAGCGGAGGTGGCAGTCCAGCCATGGGTTCCCCGACCTCTACTGTGCCCCctacacctcctcctccacttacaggccacacacactctctccctcacacccctcctcctccacctccaccccaGTCTAACGACAAATCCTGCCCGGCTTAGGACTTCTCGGTCCGACCCATGATACTGATTCTTACATACTCTTTGATTCTTACAGCTCTTCTAGCAGGTGTTTCACACAAGACCTAACCCACTACTCATGTAGCATTCAGTTCTTGGTGTCCGGGGGAGTTCTTAAGGCATCATGTTCTCTTTAGAGTGTCAAGAGTTTTTTTCGCCCCTTTACTGGCAGCAATGCTTACTGCAGGTCAGCTATCAGAGGGTGTAGATTAGTGAACTCccataaaaaaagacacttctttttcttttgccaaCGCAGAGATCCAAGGCATCACTGGATTTTGAATTTCTTTTTACAAGGGAACAGGACTCAGGATGGATACTTACAGACCTACAGCTTACATACACTAGTTTGTGATGTTTGGAATTGTGTTTGAGTGGGTGTGCAGGAGTGTTACTTGCTTTTACACGCAGATCTAAGTGTGGAACAAAAAACACTGTTTGATTTTTGTATAGTAGACATGAcagttttccttttctttttaatgaccCATGACTAGCGGACTGGAAGGGAGTGTTTGATTCCTGAGAATAGACTGTGAAATGCTAAGCTCTCGCTCTGTGTAGAAATGAAACACACTGACTTGCTGCTTCAGAAGTGGAAGACTGGAGATAAAGGTGGACTTTTGAGATgatgaaaggaaagaaaactGGGCCAAATATCAGTGTATGTCATGTGATCGAGAGCTTTATTTGATCTCTTCCTCCAGTGTTTGATAtgttggtgattttttttttggaattattattattattattattactgttcaGTACTAGGACAACAACAAGAGCATAGCAGGAGCAGTGCTCTCCAAAACCGTACATGGCCAACAGTAGTTCTAATTACACATATAGCAATACAGATCATGAAAGCTGGTAGTTTGAGGCATTATGCTGCTTCTCTCCTGCAGCTCTATTATGTATGTAGGGGACCACTGAAACCCAGCATTTTTATAGGTAATGTTGGACTgtacacatgcgcacacattctctccaaatgtgtgtgtgttcgtgttttGTGGCAGCTAAACGCCTTTCAGGTTTTCCTTGCATGCTGGGGCCATAGACAGCAGCCATTATGGTGAGCTGGCTGATTGCATCAGTTTATATATCTGCAGTACCAGCCACAGGACAACATCAAACCCAAGTTACAGCTTGCTTCTTTAACTAATAAACTTCAGACTTAACAGTAAAAAGGGTTATATTATTCTAatggtgtgtatgtatgtttaataaTCATGATGATAACTGGAAGCATGGAGCTGAGGATCCTCTTGAGTGTGTTTAGATAGAAGCACAACCAACCACCTCATCAAATGCGTTCTTAAGCAAAGTTtgcttttgttttacttttttgttcCCAGTTGTTAATTAATGCTCAGAATCTGTAATGGTAAAATGTTGAACTGTGTagctgtctgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcctgtgtgaaCATGCATGGATGTATAGTATGTATGCACCTCACCCCCCACCCAGTGCCCACCCATCATAAAGGGATGCCACCCGACAGCAGCTGTCTAGAGACAGACACTTCTCCCATGTTCTGGAGTACCAGCAGCCTTAGTGCTGAATAAATATGCACTGTGTACATGTGACCAGCTAAAAAGCCTGCAGGtatagacatacagtatgttgtctCATCTTCAGTTACTGCTGTAGCAAAACCAGTAGCGGACCAGCTTCTAAGTAGAAAGAGGACACGAAAACCCAAATacaaggacttttttttttataatattatttGCTAAAATGTACCTTATGTACCCAAAACTAGATCTGAGGATGAATTGAGGAATATGTGAATCATTTTGCAAACACTGACTTCATAAGTGGACAGGAACGTTCTGGGTAAACTGAATACCTTATCGTTGTAGTTCACCTTTTTGAAACTGTATTGAAGTCATTTCACTGAGGCGTCCTCAAATTCCCCTCTCTCATGCCTTTCCCCTTCTCCCAGAAATACAGCCTGTACTGCATTCCTGTATGCTCTCTACCAGGTAATGAATTATACTTGTTaaggtttattttttatctctGTATACTGTTTGTGTATTACCTGGTGTATTTGTGTTGCTCTTACCTCATCATGACAACTGGAGggactgtgactgtgtgtgtttgtggtgagaaAGGAACTCATCTAAtgaacacacactctcacacatacagacgTGCATGTGGTTGGTTGGTGTGTTTTGTCCCGGCTGTGCTGTTAAGGGGAGCTGGGACCCTCTTCGATCTCAAATCAATCAGTGGCACTTGAACAAATTGGCTTGCGTGTGGACTAACTGTGTGGGGATGATTTGTCAGAATTGAATATTGTTGAATATGCATTTTAGTGTCCATTTGAAAACAGcagaactaaaaaaaaagactgtaatGTCAAATCTATTTATAGTTGTCTCTGTATTACTGGAGAATCCTGTGTTCCGATGTACTTTGTATATACAATGTTGTACATTACAGAGGTACACTCTTTTTTGGTACAATATTGTACAGTAATAGCAATAGTAGTTTAATCGAATAGGCCTTATATAATTCTATGTGTAGTTCTTGTAGTAgatctgtttttttaataaacattgCTTGCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638907.1 lncRNA upstream 115175 13775781 ~ 13777150 (+) True LOC120556887
TU51173 lncRNA upstream 403489 13456929 ~ 13488836 (+) False tfeb
TU51065 lncRNA upstream 519974 13319684 ~ 13372351 (+) False mdm4
TU51054 lncRNA upstream 580184 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 589118 13296376 ~ 13303207 (+) False vamp3
TU51240 lncRNA downstream 72894 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 83947 14002962 ~ 14003187 (+) True G38164
TU51286 lncRNA downstream 126342 14045357 ~ 14045559 (+) True G38206
TU51342 lncRNA downstream 274088 14193103 ~ 14195417 (+) True G38247
TU51373 lncRNA downstream 374918 14293933 ~ 14294157 (+) True G38274
XM_039797247.1 mRNA upstream 389405 13456935 ~ 13502920 (+) False tfeb
XM_039797302.1 mRNA downstream 1498 13920513 ~ 13941299 (+) True ikbke
XM_039797305.1 mRNA downstream 1498 13920513 ~ 13941299 (+) False ikbke
XM_039797304.1 mRNA downstream 1680 13920695 ~ 13941299 (+) False ikbke
XM_039797306.1 mRNA downstream 24743 13943758 ~ 13955896 (+) True LOC120557194
XM_039797307.1 mRNA downstream 45284 13964299 ~ 13976366 (+) True LOC120557195
TU51174 other upstream 364006 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 524036 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 606014 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 684067 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 699005 13193247 ~ 13193320 (+) True LOC120558251
TU51331 other downstream 308200 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 416374 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 889337 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 946044 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1726496 15645511 ~ 15647851 (+) True G38834

Expression Profile