RNA id: XM_039797311.1


Basic Information

Item Value
RNA id XM_039797311.1
length 3174
RNA type mRNA
GC content 0.45
exon number 10
gene id mapkapk2a
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14006356 ~ 14045222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCTCCGACTGGGTGTCTGTCGGAAAGTGAAGTGTGTTTGGCGTGCTAGGTGTCGGAGTTTTCCCCGTGTTGTCTGTCTTTTGTTGAGTGTTATTATCGTTTTTTTTAACTCCACTTGCCAGATTTTACATACTTATTTAGAAACCCAGTACTGTAGACGATTTATGGGATGTTTTAGAAAAGTTCCCGAAGTGCTCTTTGAGGTACCGGTGGACGGCGGACACCACCGGAGATGGATAAGCTAACCGATAGCTGAGTTGTTAGCCGAGAATCACAGCTCAAGAATACGATTAatactagcatgctaacagctagctaatTTAGCTTTGCTAACCTTTAACGTCAGAACTACTGCCGGTTATTTCTCGGGCCTGGCTGCTTCCCCGTGAATAGTTCGTCAGAGGCCAGCTAACCCAGGAAGAAGACTCTGTCTACATTTAAAGGAAAAAGACATACGTGTTGTTGAGAGGTGGCTGTTGTTCGTCTCTCAGCCCAAACCAAGCATGCTGTCCAACGCACAGAACCAGCCACTGTTTCCCAACCCGGCGGGGCAGCAGAACCCGGCCGGGCAGCAGAATACTACGGGCCAGTTCCTTCCCTTCCACGCAAGACCCTCCTTACAGATCAAAAAGAATGCCATTACAGATGACTACAAGGTAACCAGCCAGGTGCTGGGGCTGGGCATCAATGGCAAGGTGCTTGAAATCTTCCAGAAGAAGACTGGAGACAAGTATGCGCTGAAGATGCTGCAGGATTGTGCCAAGGCCCGTAGGGAGGTGGAGCTTCACTGGAGGGCGTCACCTTGTGCTAACATTGTGTGCATCATTGATGTCTATGAGAACCTCTATCAGGGCAGGAAGTGCCTGCTTATTGTCATGGAGTGCATGGATGGTGGGGAGCTTTTTAGTCGAATCCAGGACAGAGGGGACCAGGCCTTTACAGAGAGAGAGGCATCTGACATCatgaagagcataggagaggccATTCAGTTCCTGCATGCCATCAACATTGCACACAGAGACGTCAAGCCAGAGAATTTACTGTATTCCTCGAAGAGGCCCAATGCCCTGCTCAAACTCACAGATTTTGGCTTTGCCAAGGAGACCACTTCACACAACTCTTTAGCTACCCCCTGCTACACACCCTACTATGTTGCTCCAGAGGTTCTGGGCCCAGAGAAATATGACAAGTCATGTGACATGTGGTCGTTGGGTGTCATTATGTATATCCTGTTGTGTGGATACCCTCCTTTTTATTCTAACCATGGTCTAGCCATCTCTCCTGGGATGAAGAAGAGGATCAGGATGGGCCAATATGAGTTTCCCAACCCTGAATGGTCTGATGTATCAGAGGAAGCTAAACAACTGATTAGGACCCTCCTTAAGACTGAGCCGACGCAAAGGATGACCATCACAGAGTTCATGAATCATCCATGGATCAATCAATCGATGGAGGTTCCCCAGACCCCACTTCACACCAGCCGGGTGCTAAAGGAGGAGAAGGACGCATGGGAGGATGTCAAGGAGGAAATGACCAGTGCCTTGGCAACAATGAGGGTTGACTATGAGCAAATCAAGATCAAGACCATCGAGGACTCGACCAATCCACTGCTAACGAAACGGAGGAAGAAAGCCAGTAACCCCATGCAGGACCCACAGTCTGCTGCCCACTGAAAGATGCCTGCatgcacatacagacacaggtTGTAAAAAGGAAGCAATAATTTGTCGACACGTGAGTCGCGTTGCATggatttttttcagtgttttatttttcatggcAAAATTTTTTGTAggagtgtttgtttttattactcTACCATTTTAACAAACCCACCACTCTGCTCTGGCAGAGAGGATGTTGACCTTTGTTTTTACACCAGTGAAGAGATTATGAATTatagaaaagaagagaagagggaaTCTGTGAGATTTCTTTGCTCTCCTTTCTCAAATATCAGGTTGTGTACTCAGAGGGGCTTGGATGTTGAAATAAGACATGAAGCCTTAGCATTAGCAGTAGTTATTTCACCCCGCAGCCCTGTTCTAGCTCTAGGCCCCAACCTGTGAATGTTAAATCAAATGGCTAAATCCCAAAAATAAAAGCAAGGGAAGGTTTCTTTTACGTACATGCAAAGTAAGCAGATGTATTTTGAACTGACAAGTGGAATGTAAGGACTCTGTCCCTGACTGTTGGAATTAGCTGGAAATAGTCACCCATTTCTGGGATTTTAAGTGGGAGCGTCTGTCAGATTCAGTTTGTCTTTGTGAATGTTGAACAGAGGCCTATGCACTCACAAAGGCCGTGTGCCATTCTGACAGAGCACCTCACAAAGGCCCCTCTCTCCTACCTTAATCTACGCTTGTTTTTCAGGTACATAGTTTATAGGGCAGAGAAGGACGCCACGTTTAAGAACAGAAACTGGCTCAACCTTTCTCCCACATGTAGCTCATAGGAGAGTGGGAGCCAACTGATACTGTATTTTTTCACGGATTTTATGAACATATTAGCATAGGCCTTACTGAGTGTTGCTAAATCAGCAGATTACCGCTACTTTTAACCGCTACCTACCATTTGGTTCAGACTTTTACTAATGTAATGCTTCCCAATTTATACCATTGCCAGATTATATTTCAGGTTAATGCTATGCACATGTGTTTGTCAGCTTGAAGTACTGCTAGGACCTTTTCATTATTGTTGATTTCTGTTTGCAAATGTGTTGGAGAGATGTCAAGCAACAATAGGCAGcattttatgtgtgtttatgtaagcAGTAGCATACACTCTATGGAATACATAATTCAGACAGACCAGGCAAGCTCCAGAGGTCTCTCTGAAAAGACATCTTAGAGTTACTGTTGGTTGCACCAGCTCAACTGTCAGGAGGCTCAGTGGGACTAATCTGATGCAATGCCACTGTTCTCCAGCACTTCTCCTCATACACTTCCTGTAGCATTTATAGGAAGTAGTAAGAACTTAAGAGCTGCTCCTCATCCCAGAGCAGAATCTTTGACAATACCACCAGCAAGCTGTCATCACATGTAGACTGGGTGTGATGCCCGGTTTCTCTTCAACGTTCTTGTTAACGCAACCGGACACTTCCAGCTCACTTGGGATCATGGGAAATGattgtgttaattttgtcagtTTGGTCCACTTCAATTTGTAAAAT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04443 MAPKAPK2; mitogen-activated protein kinase-activated protein kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51241 lncRNA upstream 3169 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 14177 13991909 ~ 13992179 (+) True G38163
TU51232 lncRNA upstream 16515 13911329 ~ 13989841 (+) True G38156
XR_005638907.1 lncRNA upstream 229206 13775781 ~ 13777150 (+) True LOC120556887
TU51173 lncRNA upstream 517520 13456929 ~ 13488836 (+) False tfeb
TU51286 lncRNA downstream 135 14045357 ~ 14045559 (+) True G38206
TU51342 lncRNA downstream 147881 14193103 ~ 14195417 (+) True G38247
TU51373 lncRNA downstream 248711 14293933 ~ 14294157 (+) True G38274
TU51375 lncRNA downstream 260538 14305760 ~ 14308441 (+) True G38276
TU51433 lncRNA downstream 419752 14464974 ~ 14466684 (+) True G38317
XM_039797308.1 mRNA upstream 17844 13978736 ~ 13988512 (+) True dyrk3
XM_039797309.1 mRNA upstream 17844 13979723 ~ 13988512 (+) False dyrk3
XM_039797310.1 mRNA upstream 17844 13981161 ~ 13988512 (+) False dyrk3
XM_039797307.1 mRNA upstream 29990 13964299 ~ 13976366 (+) True LOC120557195
XM_039797306.1 mRNA upstream 50460 13943758 ~ 13955896 (+) True LOC120557194
XM_039796397.1 mRNA downstream 67754 14112976 ~ 14119447 (+) True fmoda
XM_039796511.1 mRNA downstream 76393 14121615 ~ 14132772 (+) True slc6a14
XM_039798652.1 mRNA downstream 108909 14154131 ~ 14164411 (+) True lrrn2
XM_039798677.1 mRNA downstream 160947 14206169 ~ 14209691 (+) False rh50
XM_039798676.1 mRNA downstream 161015 14206237 ~ 14209691 (+) True rh50
TU51174 other upstream 478037 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 638067 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 720045 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 798098 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 813036 13193247 ~ 13193320 (+) True LOC120558251
TU51331 other downstream 181993 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 290167 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 763130 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 819837 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1600289 15645511 ~ 15647851 (+) True G38834

Expression Profile