RNA id: XM_039797315.1


Basic Information

Item Value
RNA id XM_039797315.1
length 2671
RNA type mRNA
GC content 0.43
exon number 13
gene id pa2g4a
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15903500 ~ 15913619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atcctaggaaacgCAAATTGTCCAGCGGGAGGCCGGGGTGTTAGCTTAGCAGCACGTCAGAACCGAGCTCAGGGGAACTGTCTGTTGCCTTTCAGGGCCGACTAGCGACTGAAACTTCACTCACTGCCAAGATGTCCGACGAGGAGCAAGAGCAGACCATAGCTGAGGATCTGGTGGTCACCAAGTACAAGATGGGTGGTGACATCGCCAACCAGGCTCTTCGTCTGGTTGTGGAAACAGCCAAGCCTGGGGTGTCGGTGCTCAGCCTCTGTGAGAAGGGGGATGCCTACATCATGGCTGAGACTGGAAAGGTCTTTAAGAAGGAAAAGGAAATGAAGAAAGGCATTGCCTTTCCCACCAGCGTCTCAGTCAATAACTGTGTTTGCCACTTCTCTCCCCTGAAGAGTGACCCTGACTACGCACTTAAAGATGGGGATCTGGTCAAAATAGATCTTGGGGTTCATGTTGATGGCTTCATTGCCAATGTTGCTCACAGCTTTGTGGTAGGAGCCAGTAAGGAGAACCCCATCACAGGCCGGAAAGCTGATGTAATCAAAGCGGCCCATCTGTGTGCAGAAGCAGCTCTTCGCCTTGTTAAGCCTGGTAACCAGAACAATCAAGTGACGGAAGCCTGGAACAAGATCGCTCAGTCGTTCAAATGCTCACCAATCGAGGGTATGCTGTCTCATCAGCTAAAGCAACATGTCATAGATGGAGAGAAGACCATCATTCAGAACCCGTCAGACCAGCAAAGGAAGGACCATGAGAAGGCAGAGTTTGAGGTACATGAAGTCTATGCTGTGGACGTCTTGATTAGCAGCGGAGAAGGGAAGGCCAGAGATGGAGGTCTGAGGACCACGATTTATAAAAGGGACCCCAGTAAGCAGTACGGCTTGAAGATGAAAACTTCCCGTACGTTCTTCAGCGAAGTAGAACGACGCTTTGATGCCATGCCCTTTACTCTCCGGGCGTTTGAGGATGAGGCCAAAGCCCGTCTGGGTGTGGTAGAGTGTGCCAAACATGAATTGTTACAGCCCTTCAGTGTGCTACACGAGAAGGAGGGGGAGTGTGTAGCTCAGTTTAAGTTCACAGTGCTGCTGATGGCAAACGGGCCTCACAGAATCACCAGCGGACCCTTCGATCCAGAGCTCTACAAGTCAGAGCATGAAGTTCAGGATGCAGAGCTAAGGACTTTACTACAGAGCTCTGCAAGCCGtaaaacacagaagaaaaagaaaaagaagGCCTCAAAGACGGCAGAAACTGCAACCGGACAGCCAACCGAGGTCACAGAGGCcacagaataaataaatactgccTTTTCACACATGCAAGACCCCAAAGAGAAGCAAGAGAAAACATGACAAATTGCCCCAAACTCTGCCCATAATACACCTAATAGTGATTTCATTAATAAAACTGATGAATTTTAGATCCTACATGGATGCTTATCACTTTACTGCATTTATTGAAAGTACCATGTTGCTCTTTCTTCCCTAACTTGGGAGTAGAATAGTAATCACAAATAGTTTTATCTTTAAAAACACTTGTTGCCAAATGGTACGTGCGCGActaatgtctgtgttttttaacTCTTTTGGTCCTTCATGTTTGTATTATTTGCAGCTGAACATTTCCTTTCAAGTAAAACTGAAGCTTAAAGTGGGGATTATTGGGAGTGAATGGCTCGGTGTTTTTGACATCCAACTGCAGATGAAGGATTATTGGATGATACCAACTGAAACGTGAATCACTTTGGTAGACTCTGTATTCCTTTCTCTAAGGCATCATGTATCTGAGGCCATCATGGATTCTCCTGTTTGAATGGGATGGTTTGACTGAATTGTCGTGGGTTGTTTCCCTTTGGCAACAAAGTTACAAGTTATCTGAACTTGTTTATATGTAAACAAAGATTTATAGTAAAATTAATATTCAGATATTTTATTGAAAGGTTTATTAGCACTTTGTCACCTCTAAAGTGTGAGAATCATAAGTGATGAGTTCAGTCATCCAgtgcattatgaaaaaaaatgtacctTTTAGCTACACTATGCAGTAAAGGGTTACATTATAAATTTGAATGGACAAAACAAAATGGACAATAAATGATGGTAATTACAAGGAGTGTAATATAAAAGATGTTTTTTGCATCAGAGCTAACATAGTGAGggtttgtgttttctcttccaTCAAGGCCTGACCACATCTTTGGCTGAAACTACAATGTTTTAACTGAGATTCTTAAAGCATAAACCTGAGCAAAAGTGTtttcaaagcaaaaaaaaaccaaaccgCTGTAATCAGCTTGACTTTAGGGAACAAAACTGCTACATTTACTGCCATTCCCCTTGAATTTTATGAGAAGATAGAAATCTATACGTTCCACTTTTGAAAAACTTTTCTATTAGTGACACATGCTACTGGCTTTATTGGACATTAGTCATGTGAGGCTTGAAAACTAAAGCTGgccaagctttaaaaaaaaaaaggttttagggGTGTCTTCAGTGAAATTGGACCAGTAAGAGATCATTTAAGGACTGAGTTTCATTTTTAAGGTCTGGATCACATTTGTCAACAGTTGAATATGTTGATGAGCGTAAAATCCTGCTTTGTAGCTCATCTGTGGGCATTGGATCTTTACatctaattaataaaaaaatgtcataca

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52211 lncRNA upstream 141185 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 148441 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 174100 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 181316 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 259101 15644061 ~ 15644399 (+) True G38832
TU52290 lncRNA downstream 920 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 5766 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 5811 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 22722 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 71005 15984624 ~ 15985096 (+) True G38966
XM_039798378.1 mRNA upstream 3599 15879790 ~ 15899901 (+) True erbb3a
XM_039798848.1 mRNA upstream 26640 15871718 ~ 15876860 (+) False arf3b
XM_039798849.1 mRNA upstream 26640 15872990 ~ 15876860 (+) True arf3b
XM_039798053.1 mRNA upstream 43729 15852208 ~ 15859771 (+) True LOC120557571
XM_039796379.1 mRNA downstream 9702 15923321 ~ 15937097 (+) True crbn
XM_039798752.1 mRNA downstream 29145 15942764 ~ 15945552 (+) True vhl
XM_039798754.1 mRNA downstream 34830 15948449 ~ 15959849 (+) False tatdn2
XM_039798755.1 mRNA downstream 38941 15952560 ~ 15960280 (+) True tatdn2
XM_039796380.1 mRNA downstream 51783 15965402 ~ 15974237 (+) True ccdc174
TU52135 other upstream 255649 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1029041 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1087064 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1565740 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1669975 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 51795 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 136286 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 519619 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 603917 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1198494 17112113 ~ 17119890 (+) True G39351

Expression Profile