RNA id: XM_039797383.1


Basic Information

Item Value
RNA id XM_039797383.1
length 6235
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120557243
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14757839 ~ 14777895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCACTTCCTCACTCAGAGGGGACAGACAGTGAGGCAGGGAGAGGAGGCAGGAGCTGCCCATAAATTGCTCTGGaaaaggagaggggagagacagagctGGAAACAGAACAGATGCATTGGCAGGAGCAGAGTTGAGtggttttctctctccctcctgtctctcttTTGTTGTGTCGGTACAATAAAAATCTGATGGACATTGACAttgaccaccaccaccacctcactGCGAGCCTCTCATCCCCAGTCTGTTTGCCGGAGCTGCTTGTGCGACAGCTATCAGCAGGCTAGCGGGGGCTGCAAGGCTCTGTggcagcgaaaagaggaggaaaaaaaggaggaggggCTGTGGTGAGCTGGTGGGCTTCCTCTGCCTCACAGACACATTTTATTGACTTGCTAATTGGATGAGGCACTCGGAGGAGAGGATGCGGTGACCGAGAGGAGCTGCTCTCCAGAGGAGGAATACAGGCGCAAGGAAGCATTGCTCAGGCTGCGTAAATCTGGCTTCTTCatcttttaatttaaattttttattctGGAGACATAACAACAGATGTTTTTTTCAGCATCTCCCAGTGACCCTCGCACCGTGCATTCATAATTTTATGCATGACATTGTCGAACGGAGGCTCCAGCTGCCAGACGCTTCGTGACAAGTGAATGATTtccattttgatttgtttgcaCCCTGTTCcctttaacctgtttttttttcttggactCATCAGCTGGAGCTTTATTTTTGTCAGCCTTATGTGATGTGCCGTTTGATTTGAATGGTTATCTGATGGCGAGATAAATTCAAATCCTATGTACAAGGAACTGTGCAATGGATATTCATCAGGAAAAATGAAGTCTTGTCCTGGTTGCCATGACTGAGGTGTGCAGGTCTGGCTTGGTCAGAGAGCAGGTGGTACTGTGCTGAAGTCTGCTGTCCCAATGAGCAAGGCAGGCAACCCACAGAGACGCACCACCTACCTCATTTCCCTAACTCTGGTGAAGGTTGAAGCTGTGCCAGAGGATGTAGCAGGGAACCAGAGGAAGGCAATTCCAGAGGGGGAAGGGAGCCctaagaaggaggaggaggatgccCCGGAAAAAGGGGAAGGACTTGTGTGTATACAAGTgggggaaaaagaaaacacacaggtGGAAGAAGAAGTGGAACAGGTGCAGCATGGCAAGTATGGCAGCCCCACTGAGAACTGGGGAAAGCCTGAAAGTAGGGAGACTCATGGACACCCAAAAGAGATTGTATCAGTTGGTAAAAGCAAAGACACTTTTTTTGTACATCCACCTGTTAGGCAAATGGTCAAAGTGTATGGAGGAACTACCTCTGAGGGAACTGTGCGCAGAGAGGGGCCTCGCTCAGACGCCATGCGCCCTAAGACGGAGCTCTACAGAGAGCCTCCCGTGCTCTTCCTAAAGGGTGAAAATGGAGCAGACCAGAACAGTCGCTCACGTTGCAGCCTCCCTTTTTCCATCCCGCCACAGGTCAGCCAGCGCCCTGAAGTCCTGATGAGGTCACATGCAGGAGGCAACTCTGCATGCTGGAGGGAACTCAGAGAGGCCAATACAAGCCTGTATCACTCTGCTAGGACTTTGGATCGAAGGGATAACCGTTTTGGGGACCAGTCCCCCTTAATGGCAGCTACAACTCTGGGGCCTTACAGGGCGTCCTGGGCAGACAGTGACGGCAGGGGCACGCTCATTCGCCCCGGAGCTCCCATCAGCGGAGGATTTTCCGGCATAATGGCTAGGGACAGCCCTCAAGGGGAGAGATTTAAGACAGTCTCTGTTTCCTTGCCTGCACCTCCTGTCACCGATGTGTCCAGGCCTCAAAGAAAAAGTACAAGTCGTACCCTGGACAACAGCGACCTACATTCCCTCTCTGAGGACCTGAAGAAGGGGAAGGAGGGCCAGGGAGGAACAATCCAGCGCGCTCCTCCCCGTGACCGAAAGATGCTCAAGTTCATTAGTGGCATTTTCACCAAAAGTACAGCGGTGCCAGCCAGCGTCAGCACCGCACCTCCTCTCTATCCAGCTGTGGAAAGGGGATCGAGTGAGGAGGAAGCTGCATGCACCAGTAGTCAAGAATGGACCATGAGCCAAACTATACAAGAGCTTCACCTGGGTGTTTTGGGAGGTCTGTGCAGTGGGAAGTCCGCTCTGGTCCACAGGCACTTGACAGGAAGTTACCTGCAGCTGGAGAATGCTGAGGGTCGCCAGTACATTAAGGACGTCCTGGTGGATGGACAGAGCCACGTGTTGATAATCAGAGAAGAAACAGAACTCCCGGGTGCTCAGTTTGCAAGTTGGGTGGATGCAGTTATCTTGGTCTTCAGTTTGGAAAATGAGGCCAGCTTCCAGGAAGTTTACAGAATCTACCACCAGCTCGCTACCCACCGGCCCATTTCTGAGATACCTTTCATAGTAGTCGGCACTCAGGATAAGATCAGCAGCACCAACCCCAGAGTAATAGATGATGCCAGGGCCAGACAGCTCTGCTCAGACGTGCGGCGCTGCACCTACTATGAAACCTGTGCAACGTATGGCCTCAATGTGAACAGAGTCTTCACTGATGCTGCTCAGAAGATCATGGCAGCCAAGAAGCAAGCTGCTctactggcttcctgtaaatcTCTCCCTAACTCTCCCAGTCACTCTGGAGGCTCCACCCCCGTGTCAGGTGTCTTTCCAGGACAGGCCAGTAACGGTGGTCAGAGCAGTGATTACTCCTCATCACTTCCCTCCACTCCTGTGATCAGTCATAAGGACATTGGCAAAACAATGAGAGGGGAAAAGCAAGATAGTGCCACGCCTGGGTCAGTCCGCAGTGCCACCCGGAGACGCACCTCCAGATTTGCGGGTCGGAGAGGCAGTGACTCAAACAGAAGGAGTGCAGACTGTAAGGGAGATCTGGGCAGTGGACGCTCCATTCCAATCAAACAGGGCATCTTGCTGAAACGCAGCGGGAACTCGCTCAACAAAGAGTGGAAGAAGAAGTATGTCACGCTGTCCAACGACGGCATACTGTCCTATCACTCCAGTGTCAATGACTACATGCTAAATGCTCCTGGGAAGGAGATGGACCTGCTGCGAGTGACAGTGAAGGTGCCAGGAAAGCGACCGCCTCGTGCTGTACCTGCCAGTGGCCTTCCAGTCGGGCTCAACGGGCGCACCAAAGATGTGCCGGGACCTGAGGGTGTCGGCCCagTCCCTGTAAGCGCCAGCAGCCTCCTGCAAGTGGAGGAGATGGAAGGGCTGGGTGGTGCGTTGTTCCTGAGGAGCAACCGAGCCGTGCAGCGGTGTCCCTCTACACTATCAAACCATGCTCAAAGTGTTGACTCTGCAGTCGAGGGTGTGTccagctcctcctccaccaAAGACGTAGGCTCCTCCTCACCAGTGACAGACAGGAAGAAGCATCGCAGAAAGAAGAGCATGAACCAGAAAGGAGATGCAACCATTGGCCAAGCAGATGCCAAACGCAAACTGTGGAAACTTAAAAGCTTTGGTAGCTTAAGAAACGTAAGCAAGACAGATGAGGATAACTTTGACTTCGTCATCGTGTCGAGCACCGGCCAAACATGGCACTTTGAAGCCCAGAGTGTGGAGGAGAGGGACTCCTGGGTCCAAGCCATTGAGAGCCAGATCCTGGCCAGCCTGCAACTCTGTGAGAGCAGCAAAAACAAGGCTCGCAAGAACAGCCAGAGTGAAGCAGTGGTTCTGCAGGCCATCCGCAACGCAAAGGGCAACAACTTCTGTGTTGACTGTGATGCTCCAAATCCAACCTGGGCCAGTCTGAACCTGGGCGCTCTCATATGCATCGAGTGTTCAGGGATGCACAGAAACTTGGGGACCCATCTGTCACGTGTTCGCTCGTTGGACCTTGATGATCTGCCACGAGAGCTGACGCTGGTTCTCAGTGCCATCGGCAACCACTTGGTCAACAGTATATGGGAGGCGCGCACACTGGGCCACCGTAAACCAGCACCTGATGCTACACGTGAGGAACGGGAGTCGTGGATCAGGGCCAAATATGAGCAGAAACTGTTTGTGGCGCCGTTGCCCCCTCCCACTCCTGGCGAGGGCCCAGACATCACACTATCTGGCCGTCTTCTGTTGGCAGTGATGGAGCACAACCTCCCCAAGCTGCTGCTCCTTTTGGCCCACTGCACTAAGGAGGACATTAATGCCCCTCTCAGCCTGGCGCTCTCCTGCAGGTCGCTCTTAGCGCTAAGACTGCCTGGCTCTGCCCTGCACGCTGCCTGTCAACAGGCTGATGTGGTGATGACGCAGCTTCTTGTTTGGTATGGCTTTGATGTTCGGCACCGGGATGCTCAGGGGCAGAcagctctggttctggctcGCAGTGCTGGCAGCCAAGAGTGTGTCGACATCTTACTTCAGTACGGATGCCCAAATGAACCGGCCTCCTCCTTTACCGTCGCCACAACAGTTGGTTTTGCAGCAGCCGCCATACCCAGCTTCCCTGTTGCCATGACGCCGAGCCTAACGGTTGCTACGACACTCAAGATCTCGCACAAGAGCGGAGGCAGCACCAGCTTGAGTTACAGCACCTCTAGAAGAGCAGTGTCATAATCgaaatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcttttcCCTCATACTGTTCTGTACCTTCACACAGGCCTGCGGGACTGATGAACATGTTGCCAGATGTTGCACTACCTGAGGTTttaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagggatgAAAACAAACACTGGTAATAACAGGCATTTCTGCTAGAAtgatttaaccaaaacaaaacaacaacacaaattttACCTGACTACACTTTCTAtgtaagattaaaaaaacataatattacATCCAGATGCCTCTGCATTCGGATTCAATAGGAATTTATTGCAATGTATACCAGCTGGTATGATTCATATTTCATAATGCAGTCAATATTCAACTTTATTCTCCACTCAGTTAAGAATGGGAATTTGCCTTCAGCCTCAAATTGCTTATCTGAGCATATAGGGGCCAAAAGTAAAGAACTGCAATAACTTTAAGATTTCATAGACAGACGTTAACGCTAAACACATCCACACTTCTTAACTTTATTGAGAACGAATGTCACATTTAAATCCAGAGTGCATATACTTTGATCAACACAGCTGGTCGTGCATAAATAATGTTgtgtaaattgaaaaaaaaaaactaactttacaGAGGCTAAAAAAGACAGGCTGCTTTAAAGATAATCAAAATAACTGTATAGAAATGCATTGATAAAAATATTATAATTCTAAAATTGTAAAAGTGCTTAATTTTCGAGATTGTTATTGTATTATTTGTACAGTTGGTTCTGTGTATAAAACTCAAAGGGTTACTTGTAGCTGTTCAGACATTTCCTGTACAGCGTCTTGATTTGGTTTTCCTTTAACAACCCCCTGATTAACTCTTTGATATCCAAGACTAATATTTCTATGTTATGTTTGTATCACCGTGCGTGACATGAACACTGTACATGACGTCTGCATTAGGACTCCAGCAGTAGCTCATCATCCATACGAGTGTAATACTAGACGTGTAAATGCCTTGATTTTGATTGAATGTATACAAAAACAGAtcgtttgagttttttttatttcaaacactAATGTGTGTTTTCCAAGATTATACAATTTTGATGGACTGTCAGggcgttttcattttttaattaactaATATTATTCATGCTGTGACTAATAGCAAGTATGGTTCAGTAGATTAAAACTCTGGTTCTGATCTATAAAACTGGGCCTTTGAATGACTATGATTATATTTGTAGGTGGATGAAAATGAACATGAAATAGAGGAAGGTTGCCCAAtttaatatgttaaaaaaatgcataaaaaaaacaaccctccTGCAgtactgtgtgtatttttgtgttagtCTGAAGACTACTGAGTCTACATGTCTGTGATGTAGGCATCTCTCtccatttgtatttttttactcATGCAATGATTCATAGAGCATTCATTATCAATACACTAAGGCTACTGCTCAAGCTGTGGTGTTTTGTACaga

Function

GO: NA

KEGG:

id description
K17848 AGAP2; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51699 lncRNA upstream 482 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 43323 14712784 ~ 14714517 (+) True G38495
TU51683 lncRNA upstream 45706 14710726 ~ 14712134 (+) True G38496
TU51621 lncRNA upstream 67215 14642932 ~ 14690625 (+) False G38449
TU51712 lncRNA downstream 28753 14806648 ~ 14857069 (+) False znf740a
TU51749 lncRNA downstream 85427 14863322 ~ 14864107 (+) True G38526
TU51770 lncRNA downstream 137783 14915678 ~ 14972297 (+) True G38538
TU51769 lncRNA downstream 191778 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 472674 15250569 ~ 15250933 (+) True G38670
XM_039796369.1 mRNA upstream 481 14740609 ~ 14757359 (+) True cdk4
XM_039799141.1 mRNA upstream 89386 14652797 ~ 14668454 (+) True LOC120558200
XM_039799142.1 mRNA upstream 90267 14652797 ~ 14667573 (+) False LOC120558200
XM_039799143.1 mRNA upstream 90267 14652797 ~ 14667573 (+) False LOC120558200
XM_039799098.1 mRNA upstream 107406 14638398 ~ 14650434 (+) True timeless
XM_039796966.1 mRNA downstream 55466 14833361 ~ 14856782 (+) False znf740a
XM_039796972.1 mRNA downstream 55466 14833361 ~ 14856782 (+) False znf740a
XM_039796961.1 mRNA downstream 55466 14833361 ~ 14856782 (+) False znf740a
XM_039796967.1 mRNA downstream 55466 14833361 ~ 14856782 (+) False znf740a
XM_039796970.1 mRNA downstream 55466 14833361 ~ 14856782 (+) False znf740a
TU51384 other upstream 420080 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 524315 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1229521 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1389551 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1471529 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 30457 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 87164 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 867616 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1187519 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1272010 16049905 ~ 16050430 (+) False eefsec

Expression Profile