RNA id: XM_039797412.1


Basic Information

Item Value
RNA id XM_039797412.1
length 4762
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC120557262
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22676522 ~ 22753513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACTGTCGgcgagggggaaaaaaaagtgacgcTGACACACATACAAGCCGGAGCCGAGAAGAGGGAATAgcgttttgtttcttttttctttaatttgtgTCCTTTTATTCTTTAGCGTTTTGTTGTTATTTCGCTGTATTCCTGTTACGGATTTGACTGCCTTGCTCCTCAGCGCTTGCCATCTATCGTTAACGTTCATGCCGCTCTCCCCTCACGCGGCGCTACTTTGACAGTCGGGGTCGCAGTTAACCAACTCGAGCTAGCAGCTCCATTATATTATTAGCGTTGATAGCTTGAAGGATTCTTCACACGGACTCGCGACATACGGCCAGCAAAACGTGTCCAGGGCTCCTGACTGGAGGACAGACCATGCTGCTGCACTGAgccagagggagagaaaagagaggccCCAGAGGACCGCTGAGGTGGTGGCTGGCCTGTTGGTGTGCCCCTCCCCCTTATCTGGCTGGCTAGCTGCTGCCTCTTCAGTTCACCTGATCGCTCCCCACCCTGAAGGCTAAGGCTTGCTATGGACTGTGCTTCGCCCCCAGTCCAGCCCAGTACACTACCTTAGTGGGttcccctcctcttcctgcGTGTGGTTCCCATCCAGACTCACTGTACAGAGTCGAGCACAGATCTGGTACCACCTACAGCCCCTCCTGGGTTCTCCACCCAACCCCCTCCCCAACTCCcaccctctccccctcccttaCAAAGATGTCAGTGAGCCTGACAACAGACATCCAGCAGGAGGGAGAGAGTGGGCCAGTCATCGAGCCCTGCAGTAGAGGCAAGACCTCCCCTCAACCACAGGGCACAAAGGAAGGGACAGGAGAGGGCCTGGAGCCTGAGGATAGCTCCCCACAGGATGCACagAAACGGGCTCCTAATCACAGCCATGGCAGAAAAAGGGCCAAGTCTAATGCCAAACTGAAGCTGGTACGGAGTCTGGCAGTGTGTGAAGAGTCCTCTGGTCCGTTCTCCAATGATGGACTTCCAGAATCGCAATGGAATGTGGTTTTCCAGGATATCATCCAGCTTCATATCAGCTGTCCATCAGACAAGGAAGAGGAGAAGTCCTCAAAGGACGAGTATGAAAAtgaagagaaggagaagaaggacAAGGCTCCGCGAAAGATGTTGTCACGTGaCTCCAGTCAGGAATACACTGACTCCACGGGCATTGATGTTCATGAGTTTTTGGTCAACACACTGAAAAACAATCCCAGGGATCGAATGATGCTGCTCAAACTGGAACAAGATATCCTGGAGTTCATTAATGACGACAATAACCAGTACAAGAAGTTTCCTCAGATGACGTCTTATCACCGTATGCTGCTGCACCGTGTGGCTGCCTACTTTGGCATGGACCATAATGTGGATCAGACAGGCAAGGCTGTCATCATCAACAAGACGGGCAACACACGCATCCCAGAACAAAGGTTCTCTGAACACATCAAGGATGAACGTAACATGGACTTCCAGAAGAAATTCATTCTTAAGAGAGATGATGCCAGCATGGACAAGGATGATAATCAGATCCGTGTGCCGCTGCAGGACGGGCGACGTAGCAAGTCCATTGAAGAGCGAGAGGAAGAGTATCAGCGGGTACGAGACCGGATCTTTGCCCGAGAAGTGTCCTTTTTTTTACAGTCCTCTCAAAATGGATACATCAATGACAGCAGAGGAAATCGTGAGAGCTCCAGCCGGGCATCTAGCAGTCGTCAAAGCAGCACAGACAGCGACATGAAGTGCCTGGAGCCACGGCCCTGGAGCAGCACCGACTCAGACAGCTCCAACCGCACCCTCCGGCCTCCCGTCACGAAGGCTAGCAGCTTCTCTGGCATCTCCATTCTTACCAGGGGGGATAGCCTTGGCAGCAACAAAGGCTCACAGGGAAGCTGCAAAGGCTCTCGCTCTGGCCTGCCCCTAGTCAGTCCTGATGTGTGTCCCCCACCTGCAGCCTCCCAGTCTAGCCGTAGCCTACTCCCCTGCCCGTCACAACAGCCACAGCCCCAGGTTCCGCCTCAGACTGCCCTGCTGCCCACCCCACAGCAACACCCCATGGGAAACCACATGATTGCTCAGCCGGTGGCATCTCTGCAGCCCTCTCAGCCTGTCTCCTACTCCAGCCCTTCCTGCCCACAGGTTCTCCTGCCAGTTTCTCCTCCCCAGCAGTACACAATGGGAGAAGAGCTGGCGCCCCAATTCAGCCAGATGACACTGAGTCGGCAGGGCTCCAGTGAGAACCCTGAGCCTCCACCTATGTATCAGGCTCCTCCCACAGTGCTGTCCCAGCACCCCCCTCCTCAGACCGGCTACATCATGGCTACCACGGGTCAGCCCATGCCGCCTCCGTCTGGCTACCAGCCTGCCGCTGGACACCCCCatcctccacctccaccacctcctccatccCAGCCCGTCATGCAGGCCCCACCACCCCCACAAGGCTACATGCAGCCCCCTCCGCCTCAACAGATACAGGTGTCATACTACCCTCCTGGTCAGTATCCCAGCTCAGGCCAGCAGTACCGTGTGACCCAGCCCATGTCCCACCAGGTGTCTTATCCTGCTCAGCGCACACAACCCATGCCTCAGCCCACACAGCAGTCAGGTATCCAGACCATGATGCCCAGCCAGCCACCAAGCTATCAGGGCATGATGGGTGTGCAGCAGCCCCAAAACCCTGGTCTGCTCAATTCCCAGAGGGCAGGCATGGGAGGACAAATGCAGAGCATAATGGTTCAGTACCCACAGATACCATCATATCAGGTACCAGTGGGAAATGAAAATCAGCAGGTGGTGCAGCAGCAGTACCAGCAGCAGGTGATGGTGCCAGTCAGCCAGTCTGTTCAAGGACCCATGCCTGTCTACTACAGTGTTATCACTCCCACACAGCAGAATAGCACAAGCCCATCAGTAGGTTACCTGCAGCCCCCCACCTCTGAGCAGTATCAAATCACACAGTCGCCGTCTCCGTGCAACCCTCAACAGTTGCAGCAGCAATATTCAGgAGTACCGCCTCCTGGGCCTGGGGTGATGGTCATGCAGCTCAGTGTCCCCAATGGACCACAGCCTTCCCAGAACCCCCCTCTGGTCCAGTGGAACCCATGCAAGTACTACAGCATAGAGCAGAGGCCCAGCAAGCCAGGAGAGCTCTACAAACCGGACAACACTCCACagGCCAGTAACCAGCTGACGAGTCCCCTGGCCTCCCCTACTCAGTCTCCCACCCCGTCTCCCTCTGGCAGCGTCAGCAGCGTCTGTCCAGGCCTGGGACCATTACCACTCATTTCCCAGTTTCCCCGGCCAGGAGGACCAGCTCAAGGTGATGGACGCTACTCTCTGTTGGGACAACCTCTCCAGTACAGCCTGTGTCCTCCCCTCATGCATGGCCAGTCCTACAGCTCCCATCAGAACCAAGGAGTAATGAAACACGGGGCACgagggaaaaaacaaacactcaaGTCGGCATCAACAGATCTCGGCACCACTGATGTTGTGGTGAGTCGAGTACTCGAGGTTACGGACCTGCCAGAGGGGATTTCACGTCCAGAGGCCGAAAAGCTCTTCAACCAGCTGTCGATGTGCGGTGCCAAGATCCAGTGGCTGAAGGAGCCCCAGGGTggcagaggaggagcaggaggctgTGGCCCCTGTCCTGGTGCAGGGCCTGCTGGGCTGGGAGCCACCGCTGGGCTCGGGGCCAGCATGGGAGCTGGAGGAGTGAAGGGGGACGGCAGCGACCCGGCTCACCTCTACACAGTAGTGGCAGTGTTCCCCAGCACCATGGCTGCCCAGAGTGCTTCCTTCAAACTTAACAACAGCGGGGCCAGCCTCTTCAAACTGAGGGCCGCCAAAAAAAACTATGACCTGCGTGTGCTGGAGAGAGCCAGTTCTCAGTGAAAggaaaagagagggggaggaaagaaagaaagagagactcaTGGTGGAGTGGTGGAAAAGGAAGGAGGACTGAGGGGGGACTGCTCTTAGtgtacaatttaaaaacaaaacaaacaaaaaaactacttgAGTTAAATGATGTGTCAAATGTATAAAAGGGAAGAAGGTGTAAATCATGAGGTGACAGGCATTTGGTTGCAAAtatgattttgtttgtttttattgattttttttttttttgtatttatatagcagaCAAGCACACAAGACACGCGAAGCATGTGTTTCACTGTTGCCGTGGAATGTGTGCTGCCATTATACAAAGACACATGCAaggccacacaaacacacacacacaaacaaacacacacataccaagagacacacaaacgcagGCAACAGGGTCACGTAGCacataacaaaaacacactggACAGTCGACCTCAGTCAAacctttttcctcctcctcctcctcccccccgcTCTCCAACCCTTTCTCCTTTACTCCTTTTTCTGCCGAcgctttctctccttcctcaaCTCCCCGTCACCCAGTCGTCTCTTAATCTCACATATTTATAAATTTTCATACGCACAGTTGCGCACTCTCTCTGCTTTACCGCACCGCTCCCGGCTCTTTTTTCTTGCCATGTCTCATTCTGCCTCCTATCTCTCTGCTCCTCTCATGTACTCTCtcactgctctctcctctcttgctTTCTGTTTGCCTTACTGCTGTTGTGGGTTTCTGTATtgcgctgttttttttttttttcttctcagaagttttttttcttttttgggattcaatatatttatataagtgATGTAAGGAATAAAAGAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55223 lncRNA upstream 80007 22595427 ~ 22596515 (+) True G41041
TU55222 lncRNA upstream 83439 22591672 ~ 22593083 (+) True G41040
TU55200 lncRNA upstream 121677 22554617 ~ 22554845 (+) True G41021
TU55086 lncRNA upstream 251401 22389178 ~ 22425121 (+) True G40948
XR_005638962.1 lncRNA upstream 378710 22294954 ~ 22297812 (+) True LOC120557379
XR_005638895.1 lncRNA downstream 22728 22776241 ~ 22824156 (+) True LOC120556826
XR_005638894.1 lncRNA downstream 23298 22776811 ~ 22824156 (+) False LOC120556826
XR_005638896.1 lncRNA downstream 23298 22776811 ~ 22824156 (+) False LOC120556826
TU55299 lncRNA downstream 204615 22958128 ~ 22964132 (+) True G41092
TU55313 lncRNA downstream 257969 23011482 ~ 23018265 (+) True G41099
XM_039796723.1 mRNA upstream 121920 22507327 ~ 22554602 (+) False arhgap9
XM_039798723.1 mRNA downstream 7958 22761471 ~ 22770032 (+) True LOC120557968
XM_039796538.1 mRNA downstream 106541 22860054 ~ 22906187 (+) True LOC120556810
XM_039798335.1 mRNA downstream 155923 22909436 ~ 22935567 (+) True shmt2
XM_039796502.1 mRNA downstream 353305 23106818 ~ 23126652 (+) True LOC120556778
XM_039799096.1 mRNA downstream 395562 23149075 ~ 23153670 (+) True slc32a1
XR_005638988.1 other upstream 684723 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 2527832 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2752973 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2817181 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 3044516 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 995397 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1004245 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 3515089 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 3788994 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 3788994 26542507 ~ 26548799 (+) False G41850

Expression Profile