RNA id: TCONS_00073827


Basic Information

Item Value
RNA id TCONS_00073827
length 933
RNA type nonsense_mediated_decay
GC content 0.50
exon number 4
gene id XLOC_037591
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3490824 ~ 3496579 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGtcttgtgtgtgttttcctgCAGCGGGTCAGTCAGATGTAGAGTGTCATCTAGTGCACTTCAGAGCTCGAGGATGATGGAGGACTACCCGCAGTTCCTGCTGTTCTTCATTCTGGCGTCGGTGGTCGGGATTGTGTCGATCGCGGTCGCTTTATCCTGGGTTTTACACTACAGAGAAGGGCTCGGATGGGACGGAGGAGCGGCTGAGTTTAACTGGCACCCGCTGTTGATGGTTATAGGCTTTATTTTTCTTCAAGGAATCGGTAAGGACAATTGTAGTGTACAGACTGCCATGGACCTGGAGGTGCAGCAAGCAGATGATGAAGTTGATCCACGCAGGGCTGCATATTCTCGCCTTCATCTTGGCTGTGATTTCTGTGGTGGCTGTGTTTGATTTCCACAATGCCAAAAACATTCCCAACATGTACAGTCTTCACAGCTGGGTTGGTCTGGCTGCTGTCGTACTGTATCCATCACAGATAGTGTTGGGGATCGCTGTGTATCTGATACCCGTCACCCCAGTGCGTGTGCGTGCAGCTCTTATGCCTTTGCACATCTACAGCGGCCTCTTCATCTTCATCAGTGTCATCGCCGCAGCTCTCATGGGCATCACTGAGAAACTCATATTTAGCCTGAAAAGTCCTGCTTATAAAGACTCTCCTCCTGAAGCCGTGTTGGTGAATGTTCTCGGGCTGCTTATTGCTGCATTCGGTGCACTTGTTGTCTGGATTGCTACTCGCTCCGCTTGGAAGAGGCCAAGAGAGGAAACGGCGCAAACGTTGTCCAATAACACCACAAGCCCAGAGGAGATCAAAGTGGGCACTGATATGACCACAACAAGCTGAATCCAACTTCGAGATAAGCAGATGTATTGGAAAGCAGAAGAGTCTGCGGTGTAAAGTTTGTTGATGCCAGTTAAAGGGttatttcac

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0010039 response to iron ion biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0031526 brush border membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000293 ferric-chelate reductase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko04978 Mineral absorption
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050522-365 Predicted to enable identical protein binding activity; transmembrane ascorbate ferrireductase activity; and transmembrane monodehydroascorbate reductase activity. Predicted to be involved in ascorbate homeostasis and iron ion homeostasis. Predicted to act upstream of or within response to iron ion. Predicted to be located in apical plasma membrane and brush border membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Orthologous to human CYBRD1 (cytochrome b reductase 1).

Ensembl:

ensembl_id ENSDART00000136599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075285 lncRNA downstream 95310 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 95577 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 95577 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00075284 lncRNA downstream 210380 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073824 lncRNA downstream 336545 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00073839 lncRNA upstream 435144 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075288 lncRNA upstream 1042896 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00075289 lncRNA upstream 1369521 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 1546508 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 1548396 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073825 mRNA downstream 90102 3397407 ~ 3400729 (-) True XLOC_037590
TCONS_00073823 mRNA downstream 340935 3135062 ~ 3149896 (-) True XLOC_037586
TCONS_00073821 mRNA downstream 456706 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073822 mRNA downstream 456767 2949601 ~ 3034064 (-) True XLOC_037584
TCONS_00073819 mRNA downstream 545823 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073828 mRNA upstream 1798 3498377 ~ 3519253 (-) False XLOC_037592
TCONS_00073829 mRNA upstream 2505 3499084 ~ 3519717 (-) False XLOC_037592
TCONS_00073831 mRNA upstream 125389 3621968 ~ 3653259 (-) False XLOC_037593
TCONS_00073832 mRNA upstream 125389 3621968 ~ 3653271 (-) True XLOC_037593
TCONS_00073833 mRNA upstream 169822 3666401 ~ 3671911 (-) True XLOC_037594
TCONS_00073809 other downstream 1153528 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 1213339 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 1531279 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073801 other downstream 1534908 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073800 other downstream 1537798 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073830 other upstream 11739 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 947339 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 2912578 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3221098 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 4025856 7522435 ~ 7539023 (-) True XLOC_037632

Expression Profile

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