RNA id: XM_039797437.1


Basic Information

Item Value
RNA id XM_039797437.1
length 2881
RNA type mRNA
GC content 0.43
exon number 6
gene id glyctk
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20187655 ~ 20195749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgtgatgggctgatgccactGGAGACGtctggagatgagaaggCTTCTAGGTTTTGCTCCAGGAAGCAACATGGACGCAGGAGaagtgaagaagaaaataacagCCGGAGTTCTGTCCTTACAGAAAGGCAATTTCTGCTGCGACCCACTGAACTGTCCATGGCACGTGTTCTTTCCCTGTTTCGGCCTCAGCCTTTTCTGGCCCTGCCATCTCTTGTTAAAAGAAAACAGTCGCATCAGAGTAATGGAGGGAGCTAAACACAACTTGCCTGACGTTGATGCCCAGAAGGCAGCTGAAGCGATCAAGCAGTTAGCCAGTGAACTGACAGAGAAAGACCTGCTGCTTGTACTGATTTCAGGTGGAGGCTCTGCGCTATTACCTGCACCCATCCCACCAATCTCATTGCAAGAGAAACACGATGTTACCCGCAGACTTGCAGGTGCTGGTGCCACTATTCAAGAGCTGAACACTGTGCGACGTGCCCTGTCTTTCTTAAAGGGTGGAGGGCTTGCTCATTGTGCTCACCCTGCCCAGGTGGTTTCACTGATATTGTCCGATGTAATTGGGGACCCTGTGGACTTGATAGCCAGCGGCCCGACAGCGTGGAGTGAGGTGTGGCCTGAAGAAGTTTTGTCAGTCCTCGAACGTTACAAGCTGCTGAACTCTCTACCAGCCTCAGTAAAGGATGTCCTTGGGAGACCAAGTCCCAGGTGGAGGGAGAATAAAGATGAATCCAATACATCAGGACATGTTCTcaacgctgtgattggctccaACAGCATTGCCCTGAAGTGTGCAGGTCGCCGTGCCCGAGAGTTAGGTTTCCGCCCTGTTGTGCTGGCACCAGGAGTGTGTGGCGATGTAAGGTCAGTCTCCAGACTATACGGCCTCCTGGCCCGCTTTGCCTGTTCTCGAGAGGAACCTCCTCCAGAGATTGCCGCTGAGCTGCTCAGGCTGGGGCCTGAAGTAGGTGTGGAGAGCTGGGACCTCTGCCGTACCATGCAGGTCTTGGGTGAAGGGCGTACAGAAGGATGGGGTTCCACGTGTCTCTTAGCTGGAGGTGAGCCCACTGTGGAGCTGACAGGCAACGGTCGAGGTGGTCGAAATCAGGAGCTGGCTCTTCGAGTGGGACTGGAGCTGAGAGGCCTGAAGCTTCCGCCTAATGGCCCTGTCTTCCTGAGTGGTGGAACTGACGGTCAGGATGGACCCACTGAGGCAGCAGGGGCCATCACTGATTGGGGGGTGTATGAAGAGGCACAAGCAAAGGGGCTGGACATCGACAACTTCCTTACCAACAATGATTCTTACACATTTTTTACATGTCTTTCTGCTGGTCAGCGCTTACTTGTACCTGGCCTAACCTGCACCAATGTGATGGATGTGCACATGCTACTTATCCCACCAATTCCCCATTAACATATGATAATTCCAAAGCACACCAAATAAATGATCTAACTCCAGTGGATCTAGATAAATAAAGTACTTTATCAGTCTAACTTGAAATTTTAGTACTCTATTTAACTCTAGCTAAACATGTTTGGCCCGTACCTGTGAAACCCTTTGTAAAGCTATATGAAAGCAAGACTGGTATTGCTATATGACATTATAACGACCACAAAATATGAGATAGGAgtggaatataaaaaaaaaagaacatttttgtTATCAGCTTTTACCTGGGAACAATAAGCTCTTAAATAGTAGACTAGctgatttatctttttttacaaACCAGCTCTAGCAAGTAGAGACATCAAAGACATCAGTatttcaaaaaaacaacacatttaatATCAATCAAGCTATTTAAACAAAACTTGCATTTGTATTATCTTCATGCTTTGCCGCTGGTCTCTTCAGGTACCTAAAATATGCTGATGGTTTTGTTTAGTTCATTTGACAAGGACTATGTACAACATAAAATCTTTCTGTAAATACACACTGCAGTGCATTGTCTTGTATTACCGACTTGTCTTTGCCATTATAACAGCATTATAACTGTAAGGAGGCTCATACAATGCACACAAAGTATTCAACCCCCCTTTGACTTTTTCATATATCTTATTTTACATTAAATCCCAGTTAACTACTCTTTTTTGACACATTAACATAAACTAATGtcaaagtaaaacaaattgataagcacaaatatataaaaatattaaacctCAAGTATCAATGTATTTTGGCATTTATTTTACCCTCTACCATGAAAAGCCACTATGGTCTGCTGTACAGAAGCACCCCCACGAAGTGCCACCATGCTGATCCTTTCAGATACATAATTTAAAATGATCTGTCACACCTTGATTACACAGGTGGTTTTCATTCAAAGTGTGCATATAAGGTGTGTCATTAATTGAATCTAATTTTGATTAGTTGTAAAGATTTGTTTTCACTTTGACACAAGAGATTGCTGTGAGTCAATGTTGAAACAGGACAAAGTCAAATGGGGGGTGAATACTCTAGACAGGCACTCTGTATCACTCATTAAGTGCAAATAATGCTccttatacagtatgttatggaaaaacagcagttaaaaaaacacaaaaatcgtGGAAGATGAAAGATATGAACTGATTTTCATGGACCTGTATTTCAAAAGACTTGAAAAATACATTCTATTGTTCCTTTCATCATTCAAATCAAGTCCAATTATTTTGCTCATGGTCAGAATGGAACATTTTTATGTCTGTTATCATCACAGTGTTCTTAAAGCAACCTTCATTTACACACAAACCCAGCAATATTTGTCACATTTGTACTGAAGCCTCATAGGGGAAAAAAGGGGACCAAAGCAAAAAATGTTATGTATGTGGAGTAAAGTTCTGCTCAATGACAAATGTTGACAAGCCAAaataaatagctcacatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54264 lncRNA upstream 30130 20156854 ~ 20157525 (+) True G40357
TU54258 lncRNA upstream 40672 20146735 ~ 20146983 (+) True G40352
TU54235 lncRNA upstream 65785 20068278 ~ 20121870 (+) True G40339
TU54169 lncRNA upstream 425157 19761173 ~ 19762498 (+) True G40284
TU54155 lncRNA upstream 446267 19739815 ~ 19741388 (+) False sema3fa
TU54370 lncRNA downstream 31588 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 70091 20265840 ~ 20266366 (+) True G40442
TU54439 lncRNA downstream 223391 20419140 ~ 20423496 (+) True G40479
TU54466 lncRNA downstream 296245 20491994 ~ 20531354 (+) True G40488
TU54621 lncRNA downstream 527473 20723222 ~ 20725950 (+) True G40592
XM_039797440.1 mRNA upstream 19864 20161369 ~ 20167791 (+) True hemk1
XM_039797269.1 mRNA upstream 264106 19917889 ~ 19923549 (+) False abhd14b
XM_039797267.1 mRNA upstream 264386 19917889 ~ 19923269 (+) True abhd14b
XM_039797268.1 mRNA upstream 264851 19917891 ~ 19922804 (+) False abhd14b
XM_039797991.1 mRNA upstream 298923 19883601 ~ 19888732 (+) False si:ch211-161c3.5
XM_039797431.1 mRNA downstream 2240 20197989 ~ 20202832 (+) False mon1bb
XM_039797429.1 mRNA downstream 2246 20197995 ~ 20202832 (+) False mon1bb
XM_039797430.1 mRNA downstream 2707 20198456 ~ 20203853 (+) True mon1bb
XM_039796281.1 mRNA downstream 22817 20218566 ~ 20224017 (+) True si:dkey-183j2.10
XM_039798761.1 mRNA downstream 305880 20501629 ~ 20504671 (+) True ppcs
TU54259 other upstream 38965 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 264106 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 328314 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 555643 19617181 ~ 19632012 (+) False LOC120557344
XR_005638988.1 other downstream 1754627 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3553161 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3562009 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 6072853 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 6346758 26542507 ~ 26548799 (+) False G41850

Expression Profile