RNA id: TCONS_00008429


Basic Information

Item Value
RNA id TCONS_00008429
length 521
lncRNA type sense_over
GC content 0.46
exon number 2
gene id XLOC_003705
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42726712 ~ 42819730 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaCGCGTACGTTCGGTGGGGGAGGAAATGCAGGAGGAAACCTCGCAAATCCAGGATCATCTTTCAAGAGCCGGGACACGTATCAAAgaaagagagaggagagagaaaaACCCTGGACGGAAAACAAGTCAGACGGAGTTTACAGAGATCTGGTTGATGAGCGAGCTTTGAGGGACATCATGGAGATGGGCTTTAACCGAGAGGCGGCCAGACAGGCTCTGCTAGATAACAATAATAACCTTGAAGTGGCCCTTAACCTCCTGCTAACCAGAGCAAACCAGCCCAGAGCAGCCCCAGTGGAGCAGAGCCGCCCGCCGCCCCGAGGTAAAAACCTGCAGATGGTTATAAACGAAAAATAACCAGAGAGCAACTTCACACAGGTGTCAGCATGATGCAGCACTCTTCATTTTAATGTCCAATACTgatgacattttaaaattgttCTTCATTTTTTGCCCTCCTGtgcaatacttttttattttccaaGCAATATTTAACagattaaagacattttttactgca

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0035145 exon-exon junction complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007166 lncRNA upstream 220596 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 375204 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 661671 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 695287 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008426 lncRNA upstream 723914 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008687 lncRNA downstream 41099 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 41103 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008689 lncRNA downstream 41105 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008690 lncRNA downstream 41115 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00007180 lncRNA downstream 41116 42839867 ~ 42841508 (+) True XLOC_003707
TCONS_00007177 mRNA upstream 61138 42730639 ~ 42732440 (+) True XLOC_003706
TCONS_00007174 mRNA upstream 70920 42641404 ~ 42722658 (+) False XLOC_003704
TCONS_00007175 mRNA upstream 74219 42641469 ~ 42719359 (+) True XLOC_003704
TCONS_00007170 mRNA upstream 158138 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007169 mRNA upstream 158138 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007181 mRNA downstream 244420 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007184 mRNA downstream 315357 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007186 mRNA downstream 564324 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007187 mRNA downstream 576575 43375326 ~ 43388063 (+) True XLOC_003714
TCONS_00007188 mRNA downstream 602450 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007172 other upstream 168091 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1328342 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1635650 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1635652 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1904284 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007182 other downstream 246075 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1226011 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1526010 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1526010 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1530023 44328774 ~ 44335322 (+) True XLOC_003732

Expression Profile

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