RNA id: XM_039797451.1


Basic Information

Item Value
RNA id XM_039797451.1
length 2438
RNA type mRNA
GC content 0.48
exon number 20
gene id eps8l3a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17034719 ~ 17042813 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCCACAGTTCGTTTTGCTACTGACAGTAGACTTTGTCCTTCTCCTTTATGAGGAAGTCTTGGGTGTATGCCGTTGACTGAGTACAGGATTAAAATATGAGTTGTATTTATCCTAAAGGGTAAATAATACAACGACATTCATCTACCAGACATCAAAGGTGTGTTATGTTCGATGCTGAAGATGTTCAGGAGAAACAGTCCCTTTGGCAACGACACCAGCAGCTACACAGGATCGATCCAGTCAAATGGTTACTCCACCATGGATGAGGTGTCGTCACAGGTGTCAAGTCAGTCGAAACCCAGTGCAAAGTCAATTTACTTGCAAAGGATGGAGTATGCCGTATCAATAAACAAGATGATGGACAAATTTCAGTACAGAGTGGAGCACTTGTTCACCTGTGACCTGAATGGGAAGGAGTTGAGAAGCGTATCGGACTGCGTGGAGCGGCTTAAGCTGCTGGACGGGATGGGTCGTGTGTGGGGTCAGAACATGTTGTTGGAGGTGCGCGGTGCCAACCTGCTGCTCACAGACGTGGAAACCAAGGAGGAGCTGGAGTCCATGGCTTTCAGTGACATCCTGGAGCTAAAGGCTGTGCTGGACACCGGAGTGTTTAAGTCCCTGCTCACAGTGTCGGTCCAGTCCggggaaaaaaacaccaccACTGTCTTCATGTTTCAGTGTGAGGATGTCAGGGCTGACTATGTTCAAAGGGATCTCTCACAAGCAATGTCCCGCAGGAGTAATGATTTAAGCCACAGCAATGCAGGACTAATAGCGGGTCATCGGGGAATGAAAAACCTTTGTGATGCTGCAGAATCTTCTGAACCTAAAGAGCAGGAGCCTGCAGTGCCCCAATGGATGGCTCCTGACTATGAGGAGGAACTAGTTGTAcctcaggaggaggaggacaaggacgaggaggaggacaagtacgaggaggaggaggaggaggaggaggaggaggaagaggaggccccACCTCCCAGAGAGGAGGTACCATCACCGCAGCCCTCCACCACCGAAGAAGAACCTGTGTCTCATCCACGCCCATACACAGACCTGGACAGGAACGTAgATATCTTAAATCATATTGTAACTGACATAGAAATCTTCATGGGAAAAGTAGCTGCAGTAGTAGctaaaaatatgaagaaaaagaagaaaaagaaaaaaggaaaagTCATGGACGGTATGCCCCCTGCAGCAGAGTTTGAAGTGTGTCTTCATAAAATCAAATGTGGTTTCAACCTTGTGGCGGAGCTCAATGGAATGATTAATAATCCCAGCGCTCCTGCATTTGTTCAGTCCTTATTCTCCACATTAGAATTCGTGGTGTCTCACTGCCCTGAGGATCTGCCACAGACCATTGTGGCGCCGCTGCTGACGCCTCAGTGTATCCGCCTCCTGAGTGAAGAGGCCTCCGCAGAACAGGACCAGCTCTGGCAGTCTCTGGGAGACGCCTGGAACATCCCCAGTACCAAATGGCCAGAAGATGACGAGGACATCCCAACATACACTCTGGAGTTCCTTGATGGCTGGCAGCCCCCTGAGGTGACTGCAGCACCTGAACCCAGTGAACCTATAAGAAGACAGGCACCTAAACAACCTGCACCCAGCCAGGCTTCGGCCAAGTGGACACCACCACCTCACCCCCCACAAAAAACACGCTCAGGTGAGTCAAAACTGCGTCACATACAGGTTACGAATGACTTCATCTCAAGAAACCACAGAGAGCTCACTGTCAGAAAAGGAGAAATAGTTGAGCTGCTGGACATGTcgaagcagtggtggaaagtgaGGAACAGCAGAGGGGAGGAGGGCTTCGTACCCAACAATGTTCTGGAGGCTCGTGTTGACGAGCAACCTATCGAAGAGACTGGAGGTTCTCCTGTCCTCACTAAGAAGTCCAAGCCTGCAGAAGTGAAAGCCTGGCTCAAAGACAAGGGCTTTAGTAATATCACTGTACGCTGCCTGGGCGTGCTGAGTGGCTCTATGCTGCTGGGGATGACCAGAGATGAACTGAAGACAATGTGTCCAGAGGAAGGGGGACGAGTCTTCTCCCAGTTACAAGTGGTCAAGTCTGCCATGGCTGTCGCCATTTAAATGAGACCAACAAGAGAACATCCAAAGAGGAGCGAGAATACGAAATCATCATGGACCAAATACTATAAGCTATTAGATAATATAAAAGGAATAATAAGTGAGATTAGTTCATAGCTTGTTAAGCATATTATCCTCTGAAACCTTGTATCAAATAATATGTCATTTTGAAATGTGCATTAGTACAGTTGTCTGGTATCATTCAAAAATGTTATCAAATCAGTTGACATTTAACAAAGTGTTGGGTCTTAATTATGTAACACAAAATGGGGTGAGCAAAAGCCTAATCTATGTGGTCACTATGTAACCTGTAAATAAAAGTTAACTGACACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 211464 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 248669 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 249655 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 252102 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 454998 16579085 ~ 16579722 (+) True G39143
TU52742 lncRNA downstream 5122 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 6984 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 7846 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 37853 17080666 ~ 17082576 (+) True G39308
TU52816 lncRNA downstream 115090 17157903 ~ 17159236 (+) True G39358
XM_039798839.1 mRNA upstream 2026 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA upstream 2026 17027709 ~ 17032694 (+) False irf6
XM_039798841.1 mRNA upstream 13980 17018950 ~ 17020740 (+) True LOC120558021
XM_039796365.1 mRNA upstream 30283 17001174 ~ 17004437 (+) True wdr77
XM_039796363.1 mRNA upstream 66616 16964617 ~ 16968104 (+) False LOC120556687
XM_039798921.1 mRNA downstream 54884 17097697 ~ 17102777 (+) True LOC120558072
XM_039798075.1 mRNA downstream 84582 17127395 ~ 17144727 (+) True LOC120557584
XM_039798081.1 mRNA downstream 150338 17193151 ~ 17197749 (+) False srsf3b
XM_039798083.1 mRNA downstream 150338 17193151 ~ 17196040 (+) False srsf3b
XM_039798082.1 mRNA downstream 150339 17193152 ~ 17197749 (+) False srsf3b
TU52524 other upstream 491140 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 599491 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 984290 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 1068613 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1386869 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 69300 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 150408 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 150408 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 150408 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 150408 17193221 ~ 17198217 (+) False srsf3b

Expression Profile