RNA id: XM_039797466.1


Basic Information

Item Value
RNA id XM_039797466.1
length 3028
RNA type mRNA
GC content 0.48
exon number 6
gene id cttnbp2nla
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23473348 ~ 23487987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACTGCCTGGCCGCTAACTGTTTCGCTGCATCGGGATCAGAGGACGAAAATCAAGTGAAACAAATCTCCTGACAGGAGAAAAGTTCATGCTGGAGTTTTCAAAGACCTCAGAGGGCCTTATGAAGGCCCAGCGTAAAGAGCTGTTTATCCAGGAGCGCTATGGCAGGTACAACCTCAGCGACCCCTTCCTGGCCTTGCAGAGGGACAGTGAGATTGTCGGGGACCAGAACAAGGACCCGGGCTGTTCCTCCCCCACCTCCAACCCTCTGGTGGTTCTCAAACTGGTGGTGAGCCACTGCAGGAGGATGCAGGAGAAGATGTTGGCCCAGCTGGCTGCAGCGGAAAGCAGGCACAGAAGGGTCATTGCAGATCTGGAGGAGGAACAGAGGAGGCACGCTGAGGACACTGCCGAGGGAGATGATGTCACTTACATcctggagaaagagagggagcgctTACAACAACAGCTGGAGTTTGAGCGGAGTCAGGTCCGGCGGTTGGAAAAAGAACAGCGTCGGATTACTGACCAGCTAGAAGAAGAACGGGCTCAGCACAAACAGCTCTCCTGCGCTTTGGCCAAAGAGTGCAAGTGGGCAAGTGCCAGGGCTCTAGAGGAGGGTCACCGGCTGACGGAGCTGAGCCGTAAACTTGACAAGGAGAAGGAGGCTTGTCAGGCACTGAGAAACGAGCTGGAGGATGAGAGGAGGCGAGCTCTGAGAATGGAGGCCAGGGTGGAGGAGCAGCTGGCCGAGTTTGACACGGAGCGAGAGCAGCTCCGCTCACGTCTGAAGAAGGAGGAAGCTCACTGCTATCAGCTACAACAACAGGTAGAGGAGCTGAAGAGGACGCTGGTAGAGGTGAATATGATGAGAGATGTTAGGGAGGCAGTTACAGCTCCAGTAGAGGCAGTAGGAAAGGAGTGGGCCACGAAAGTTCCTCCAGCAAAGACAGCAGTAGACAGTATTACGGTGGAGGACGTTGAGGAAGACCTAAACCCGCAACCTGTGCAGCCAAAAGTCAACGGTCACCACTGTCCTATGGAGACCAATGAGCACCACGGCCCAAACAACGCCCTCCCAGATAACATCATTGTACAGAATGGGAATGAGAATTCTCCAATTCATCAGAGCCAGACATCATTCTCCCCCTGCAGTGCCACCCCCTCcactcttcctccttcctccccaTGTGCTTCGCCTGTCCTTGCGAAACGCCCACCAGGCAGCCCGAGCCCTGGCAGCTACCAGTCTCCCTACCAGGCCGGGATCAACCAGCGCTTCCACGCTGCTCGTCACCGGTTCCAGGGTACCATTGACCCAGAGCCTCCGTCCCAGGCCACACAGCCTGCTCTCCCCCTCTCACCAAAGGATGTCTCCCCTGTGACCAGCAGCTCGTCCCTAGAAGCCAGCCCAGTCAAGCAGATGGCCCGCAGCACAGTCACTCAAGTCCTGTCTCGCTTCACCACCGTACAGCAGAGCGCCACACCGAAGCTCGCCACACCGAACAATTCACCCTTCGGTACAGACTACCGCAGCCTGGCAGCGCCTTTGTCTCCAGTCATCGGAAGGGCCGCAGGAGCACTTCCGCAGGGGATCCGATCACCCACTATCCCCAGGGCAGACAGGGGCAACCCTCCACCCATCCCCCCTAAGAAGCCCGGTCTGGCCCAGGCCCCTCCCTCCCCGGCAGCAGTGCCCAGGTCTGCCAGCCACTTCTCTGACAGCCCCCTCTCTGCCAGCTGTGGCCTCACCTCCAGCCAGGAGGGAGTCAAAGAACTGGACATGGTGGTTTCTTCTAACTAACTGATCATTTGATTGGTCAATGAATGAgttagctgctgctctgcttgtGACACGATGGTTGAATCCACATCTCATAATCATGATTGTTGAGATATTGTTTTGTACATGACAGGATTTATATGATGTGCTTATTTGAACAGAGGTCCCTTCAAACACTgttataattgtatttattaaatTTGTTTTGGTATGCGCTGAGGCACTATTTTAGATAGTGGTTAAAGAGCTGGTACTAGTGAAGAGTTACAACTGATAGTTTGAGTTTCAAATTAGGGTTGTGCGATATTGAAATCCCCTCTACTGACGATATAACTTTAACAACGATATAAGAAATTATCGTcccaaaaacaatataaatatcTATTGACTGGAGactcatacagtacagtatgttgcaATACCCATAAGTGGACAATGTATAGGCAGTAAACGCTATTTTACAAAAGGGCATGCAGAGATCAATGAATCAAATCAATCAACCGGTTATTTTATTCAGTAACGCATTTATCAACATTGATGTTTGGAATGAGGATAACAGATACAGTTATCGCGGCCAACCAATATGCGTTAAAAGATAATCTCATCATATCACCCAGCCTATTTCAAATGTGCCGATACTGTATGTTGGGCACACCCTACTGTTATGGTatatttagtctttttttatggTATCATATTTCCAAAGAATACAAATCAGTTTATCACCTGAAGAGGTATTATGTTTCTCTAGTATGTTGCTCGTTATTACAACAAATACTGTAATCTTCAGACCAAATGTAACAAGTAGTCCTTGGACCAATGTATGTCTCATTTCATGTCTTGTGTATATGGACATAGCGgtcgtttttataaaaatgtatagttCATTTTATAAATGTTCCTTAGTTATTAATGTATAATAGTTTTACACAACAGGTAATCTAATCAGTGTTGTACTGAGCTTTGTTCATGTATTACTTTAATGTTGCATTGTTATGATAATCTTAAGGCTCAGAATGTATGCAGGTGCCATTGTACTCTTCTAAGGATTAGTGATTCTGATGAATGTCATGTCTTTGTCATTTATAAGAAATCATTATAAAACACTCAAGTATGTTTTAGTCAACCATGGCTTTGATTAATTTCATAACAACTGTTGTGTTGGTTATCTCTACTTTTTAATCAGATCCTTTACAGTACTTTAAATGCTGGGAAGTGAtggataaaataaatgaatcccAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55482 lncRNA upstream 105004 23367385 ~ 23368351 (+) True G41231
TU55469 lncRNA upstream 115270 23337333 ~ 23358085 (+) True G41220
TU55451 lncRNA upstream 192162 23280937 ~ 23281193 (+) True G41207
TU55353 lncRNA upstream 217828 23254942 ~ 23255527 (+) True G41126
TU55349 lncRNA upstream 240463 23232203 ~ 23232892 (+) False LOC120557222
TU55551 lncRNA downstream 348711 23836698 ~ 23836903 (+) True G41291
TU55574 lncRNA downstream 358806 23846793 ~ 23847938 (+) True G41308
TU55573 lncRNA downstream 360405 23848392 ~ 23852129 (+) False znfx1
XR_005638903.1 lncRNA downstream 380384 23868371 ~ 23870584 (+) True LOC120556870
TU55615 lncRNA downstream 788073 24276060 ~ 24276910 (+) True G41346
XM_039797354.1 mRNA upstream 166289 23282142 ~ 23307066 (+) True LOC120557228
XM_039797355.1 mRNA upstream 166289 23282160 ~ 23307066 (+) False LOC120557228
XM_039797357.1 mRNA upstream 166289 23284866 ~ 23307066 (+) False LOC120557228
XM_039797356.1 mRNA upstream 166289 23284871 ~ 23307066 (+) False LOC120557228
XM_039797350.1 mRNA upstream 192626 23274429 ~ 23280729 (+) False timm17a
XM_039797467.1 mRNA downstream 5765 23493752 ~ 23504705 (+) True LOC120557289
XM_039798564.1 mRNA downstream 83615 23571602 ~ 23665613 (+) False tox2
XM_039798562.1 mRNA downstream 83907 23571894 ~ 23665613 (+) True tox2
XM_039798563.1 mRNA downstream 83907 23571894 ~ 23665613 (+) False tox2
XM_039798566.1 mRNA downstream 83907 23571894 ~ 23665613 (+) False tox2
XR_005638988.1 other upstream 1481556 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 3324665 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 3549806 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 3614014 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 3841349 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 260923 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 269771 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 2780615 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 3054520 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 3054520 26542507 ~ 26548799 (+) False G41850

Expression Profile